sw_t* fastq_alloc_sw(const unsigned char* subject, int size)
{
sw_t* sw = malloc_or_die(sizeof(sw_t));
sw_t* fastq_alloc_sw(const unsigned char* subject, int size)
{
sw_t* sw = malloc_or_die(sizeof(sw_t));
memcpy(sw->subject, subject, size);
/* default cost matrix */
memcpy(sw->subject, subject, size);
/* default cost matrix */
- maxstu[0] = imax4(0, d[5 * y[j] + x[j]], t[j], u);
+ maxstu[0] = imax4(0, d[5 * y[0] + x[0]], t[0], u);
maxstu0 = maxstu[j];
maxstu[j] = imax4(0, s, t[j], u);
maxstu0 = maxstu[j];
maxstu[j] = imax4(0, s, t[j], u);