Fix the weird output behavior of fastq-sample.

[fastq-tools.git] / src / Makefile.am

diff --git a/src/Makefile.am b/src/Makefile.am
index 202e6c2adf1375cbb2dd08b699d0ff970d446edc..aeb9c85f6a2df5288462021a6613c246b65b6f0d 100644 (file)
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,10 +1,23 @@
 
-bin_PROGRAMS = fastq-grep fastq-kmers
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match fastq-uniq fastq-qual fastq-sample fastq-qualadj
 
-fastq_grep_SOURCES = kseq.h fastq-grep.c
-fastq_grep_LDADD = $(PCRE_LIBS) -lz
+fastq_common_src=common.h common.c
+fastq_parse_src=parse.h parse.c
+fastq_sw_src=sw.h sw.c
+fastq_hash_src=hash.h hash.c
+fastq_rng_src=rng.h rng.c
 
-fastq_kmers_SOURCES = kseq.h fastq-kmers.c
-fastq_kmers_LDADD = -lz
+fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src)
+fastq_grep_LDADD = $(PCRE_LIBS)
 
+fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src)
 
+fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src)
+
+fastq_uniq_SOURCES = fastq-uniq.c $(fastq_common_src) $(fastq_parse_src) $(fastq_hash_src)
+
+fastq_qual_SOURCES = fastq-qual.c $(fastq_common_src) $(fastq_parse_src)
+
+fastq_sample_SOURCES = fastq-sample.c $(fastq_common_src) $(fastq_parse_src) $(fastq_rng_src)
+
+fastq_qualadj_SOURCES = fastq-qualadj.c $(fastq_common_src) $(fastq_parse_src)