a program to print smith-waterman scores against a query sequence

[fastq-tools.git] / src / Makefile.am

diff --git a/src/Makefile.am b/src/Makefile.am
index 202e6c2adf1375cbb2dd08b699d0ff970d446edc..4d47d16df5cfb8e33677f93be09437d895eda756 100644 (file)
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,5 +1,7 @@
 
-bin_PROGRAMS = fastq-grep fastq-kmers
+SUBDIRS = swsse2
+
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match
 
 fastq_grep_SOURCES = kseq.h fastq-grep.c
 fastq_grep_LDADD = $(PCRE_LIBS) -lz
@@ -7,4 +9,7 @@ fastq_grep_LDADD = $(PCRE_LIBS) -lz
 fastq_kmers_SOURCES = kseq.h fastq-kmers.c
 fastq_kmers_LDADD = -lz
 
+fastq_match_SOURCES = kseq.h fastq-match.c
+fastq_match_LDADD   = swsse2/libswsse2.la -lz
+fastq_match_CFLAGS  = -msse2