Much simpler faster code for parsing fastq files.

[fastq-tools.git] / configure.ac

diff --git a/configure.ac b/configure.ac
index 44fda3e630e888369e588adad57507c407a1c199..4e6c266dd21ae4169e47556141fc5109ea5b33f8 100644 (file)
--- a/configure.ac
+++ b/configure.ac
@@ -1,5 +1,5 @@
 
-AC_INIT( [fastq-tools], [0.1], [dcjones@cs.washington.ed] )
+AC_INIT( [fastq-tools], [0.3], [dcjones@cs.washington.edu] )
 AM_INIT_AUTOMAKE( [foreign -Wall -Werror] )
 m4_ifdef([AM_SILENT_RULES],[AM_SILENT_RULES([yes])])
 
@@ -8,8 +8,8 @@ AC_CONFIG_MACRO_DIR([m4])
 AC_PROG_CC
 AM_PROG_CC_C_O
 
-opt_CFLAGS="-g -O3"
-dbg_CFLAGS="-g -O0"
+opt_CFLAGS="--std=c99 -Wall -Wextra -pedantic -g -O3"
+dbg_CFLAGS="--std=c99 -Wall -Wextra -pedantic -g -O0"
 
 AC_ARG_ENABLE([debug],
               [AS_HELP_STRING([--enable-debug],
@@ -21,10 +21,12 @@ AS_IF([test "x$enable_debug" = xyes],
       [CFLAGS="$opt_CFLAGS"])
 
 AC_DEFINE(_FILE_OFFSET_BITS, 64)
+AC_DEFINE(_POSIX_SOURCE) # needed for fileno
 
+AC_PROG_LIBTOOL
 
-# check zlib
-AX_CHECK_ZLIB
+AC_CHECK_FUNC(fileno, ,
+              AC_MSG_ERROR([The 'fileno' function is missing.]))
 
 # check pcre
 AC_CHECK_PROG(HAVE_PCRE, pcre-config, yes, no)
@@ -43,7 +45,10 @@ AC_CHECK_HEADER(getopt.h, ,
 
 CXXFLAGS=$CFLAGS
 
-AC_CONFIG_FILES( [Makefile
-                  src/Makefile] )
+AC_CONFIG_FILES([Makefile
+                 src/Makefile
+                 tests/Makefile
+                 doc/Makefile
+                 src/version.h])
 
 AC_OUTPUT