move latex definitions to use fontspec and other things

diff --git a/debbugs.Rnw b/debbugs.Rnw
index 7d059c7fcfc515f81c8d2670cb967cf297182c07..d04bf671503f91248a31bc975c05cf6c577c2ecb 100644 (file)
--- a/debbugs.Rnw
+++ b/debbugs.Rnw
@@ -1,3 +1,31 @@
+
+\usepackage{fontspec}
+\setmainfont{FreeSerif}
+\setsansfont{FreeSans}
+\setmonofont{FreeMono}
+\usepackage{url}
+\usepackage{fancyhdr}
+\usepackage{graphicx}
+\usepackage[bf]{caption}
+\usepackage{rotating}
+\usepackage{wrapfig}
+\usepackage{fancybox}
+\usepackage{booktabs}
+% \usepackage{multirow}
+\usepackage{acronym}
+\usepackage{qrcode}
+\usepackage[backend=biber,natbib=true,hyperref=true,style=nature]{biblatex}
+\addbibresource{references.bib}
+% \usepackage[nomargin,inline,draft]{fixme}
+% \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
+% \usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
+\usepackage{texshade}
+\usepackage{tikz}
+\usepackage{nameref}
+\usepackage{zref-xr,zref-user}
+\renewcommand*{\bibfont}{\tiny}
+\usepackage[absolute,overlay]{textpos}
+
 \mode<presentation>
 {
   \usetheme{Montpellier}
@@ -6,68 +34,9 @@
 }
 
 
-\usepackage[no-math]{fontspec}
-\setmainfont[ExternalLocation, 
-             Mapping=tex-text,
-             BoldFont=FreeSerifBold,
-             ItalicFont=FreeSerifItalic,
-             BoldItalicFont=FreeSerifBoldItalic]{FreeSerif}
-\setsansfont[ExternalLocation, 
-             Mapping=tex-text,
-             BoldFont=FreeSerifBold,
-             ItalicFont=FreeSerifItalic,
-             BoldItalicFont=FreeSerifBoldItalic,
-             Scale=MatchLowercase]{FreeSerif}
-\setmonofont{FreeMono}
-
-\usepackage{booktabs}
-\usepackage{multirow}
-\usepackage{setspace}
-\usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
-\bibliography{references}
-% \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
-
-
 \usepackage[nomargin,inline,draft]{fixme}
-%\usepackage[x11names,svgnames]{xcolor}
-\usepackage{texshade}
-\usepackage[absolute,overlay]{textpos}
-\usepackage{tikz}
-\usepackage{nameref}
-\usepackage{ulem}
-\usepackage{zref-xr,zref-user}
 \usepackage{listings}
 
-\newenvironment{narrow}[2]{%
-  \begin{list}{}{%
-      \setlength{\topsep}{0pt}%
-      \setlength{\leftmargin}{#1}%
-      \setlength{\rightmargin}{#2}%
-      \setlength{\listparindent}{\parindent}%
-      \setlength{\itemindent}{\parindent}%
-      \setlength{\parsep}{\parskip}}%
-  \item[]}{\end{list}}
-\def\newblock{\hskip}
-\newenvironment{paperquote}{%
-  \begin{quote}%
-     \it
-  }%
-  {\end{quote}}
-\renewcommand{\textfraction}{0.15}
-\renewcommand{\topfraction}{0.85}
-\renewcommand{\bottomfraction}{0.65}
-\renewcommand{\floatpagefraction}{0.60}
-%\renewcommand{\baselinestretch}{1.8}
-\newenvironment{enumerate*}%
-  {\begin{enumerate}%
-    \setlength{\itemsep}{0pt}%
-    \setlength{\parskip}{0pt}}%
-  {\end{enumerate}}
-\newenvironment{itemize*}%
-  {\begin{itemize}%
-    \setlength{\itemsep}{0pt}%
-    \setlength{\parskip}{0pt}}%
-  {\end{itemize}}
 
 \logo{\begin{tikzpicture}% Pale figure
     {\node[opacity=0.3] {\includegraphics[width=2cm,keepaspectratio]{figures/openlogo-crop.pdf}};}%