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]> git.donarmstrong.com Git - biopieces.git/history - code_ruby/lib/maasha/align.rb

[biopieces.git] / code_ruby / lib / maasha / align.rb

2013-02-25	martinahansen	fixed SCORE_BASE global var	blob \| commitdiff \| raw
2012-12-03	martinahansen	fixed constants for align.rb	blob \| commitdiff \| raw \| diff to current
2012-07-10	martinahansen	fixed align.rb up a bit	blob \| commitdiff \| raw \| diff to current
2012-07-10	martinahansen	fixed bug for missing sequence in genbank parser	blob \| commitdiff \| raw \| diff to current
2012-07-02	martinahansen	added mum.rb	blob \| commitdiff \| raw \| diff to current
2012-06-29	martinahansen	clean-up of ruby code to remove rake warnings	blob \| commitdiff \| raw \| diff to current
2012-06-28	martinahansen	cleanup of pair stuff in align.rb	blob \| commitdiff \| raw \| diff to current
2012-04-23	martinahansen	workied on pair wise aligner	blob \| commitdiff \| raw \| diff to current
2012-04-19	martinahansen	fixed double insertion of indels in alignments (missing...	blob \| commitdiff \| raw \| diff to current
2012-04-18	martinahansen	added identity method to align.rb	blob \| commitdiff \| raw \| diff to current
2012-04-10	martinahansen	making changes to accomodate Illumina18 qual scores	blob \| commitdiff \| raw \| diff to current
2012-03-13	martinahansen	fixed minor issue in align.rb tests	blob \| commitdiff \| raw \| diff to current
2012-03-07	martinahansen	fixed overflow bug in align.rb	blob \| commitdiff \| raw \| diff to current
2012-03-05	martinahansen	changed align.to_s	blob \| commitdiff \| raw \| diff to current
2012-03-02	martinahansen	major upgrade of align.rb for denoising	blob \| commitdiff \| raw \| diff to current
2012-02-23	martinahansen	added duplicate_record biopiece	blob \| commitdiff \| raw \| diff to current
2012-02-03	martinahansen	added masks to align.rb	blob \| commitdiff \| raw \| diff to current
2012-01-31	martinahansen	major rewrite of align.rb	blob \| commitdiff \| raw \| diff to current
2012-01-27	martinahansen	final touches to align.rb	blob \| commitdiff \| raw \| diff to current
2012-01-22	martinahansen	fixed popen3 issue in align.rb	blob \| commitdiff \| raw \| diff to current
2012-01-20	martinahansen	changed Align.muscle to file based instead of popen3	blob \| commitdiff \| raw \| diff to current
2012-01-12	martinahansen	fixed typo	blob \| commitdiff \| raw \| diff to current
2012-01-12	martinahansen	added check for duplicate seq_names to align.rb	blob \| commitdiff \| raw \| diff to current
2012-01-12	martinahansen	added preservation of indels and case to align.rb	blob \| commitdiff \| raw \| diff to current
2012-01-12	martinahansen	added align.rb to ruby code	blob \| commitdiff \| raw \| diff to current

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