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[biopieces.git] / bp_data / mouse_cytobands.txt
diff --git a/bp_data/mouse_cytobands.txt b/bp_data/mouse_cytobands.txt
new file mode 100644 (file)
index 0000000..b2e9cbb
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+#chrom chromStart      chromEnd        name    gieStain
+chr1   0       8918386 qA1     gpos100
+chr1   8918386 12386647        qA2     gneg
+chr1   12386647        20314102        qA3     gpos33
+chr1   20314102        22295965        qA4     gneg
+chr1   22295965        31214352        qA5     gpos100
+chr1   31214352        43601000        qB      gneg
+chr1   43601000        54996715        qC1.1   gpos66
+chr1   54996715        56483113        qC1.2   gneg
+chr1   56483113        59951375        qC1.3   gpos75
+chr1   59951375        65896965        qC2     gneg
+chr1   65896965        75310818        qC3     gpos33
+chr1   75310818        80760943        qC4     gneg
+chr1   80760943        88192931        qC5     gpos33
+chr1   88192931        100579579       qD      gneg
+chr1   100579579       103552375       qE1.1   gpos33
+chr1   103552375       104543306       qE1.2   gneg
+chr1   104543306       113461693       qE2.1   gpos100
+chr1   113461693       114948091       qE2.2   gneg
+chr1   114948091       126839272       qE2.3   gpos100
+chr1   126839272       129812068       qE3     gneg
+chr1   129812068       140712318       qE4     gpos66
+chr1   140712318       148639772       qF      gneg
+chr1   148639772       153098966       qG1     gpos100
+chr1   153098966       154089897       qG2     gneg
+chr1   154089897       158549091       qG3     gpos100
+chr1   158549091       161521886       qH1     gneg
+chr1   161521886       165485613       qH2.1   gpos33
+chr1   165485613       166972011       qH2.2   gneg
+chr1   166972011       171431204       qH2.3   gpos33
+chr1   171431204       177376795       qH3     gneg
+chr1   177376795       183322386       qH4     gpos33
+chr1   183322386       189763443       qH5     gneg
+chr1   189763443       197195432       qH6     gpos33
+chr2   0       14052687        qA1     gpos100
+chr2   14052687        16394801        qA2     gneg
+chr2   16394801        29042220        qA3     gpos33
+chr2   29042220        48247559        qB      gneg
+chr2   48247559        60426554        qC1.1   gpos100
+chr2   60426554        60894977        qC1.2   gneg
+chr2   60894977        68389744        qC1.3   gpos100
+chr2   68389744        71668704        qC2     gneg
+chr2   71668704        81037162        qC3     gpos66
+chr2   81037162        88531928        qD      gneg
+chr2   88531928        101179347       qE1     gpos100
+chr2   101179347       104926730       qE2     gneg
+chr2   104926730       112889920       qE3     gpos33
+chr2   112889920       115700457       qE4     gneg
+chr2   115700457       123663646       qE5     gpos66
+chr2   123663646       131626836       qF1     gneg
+chr2   131626836       134437373       qF2     gpos33
+chr2   134437373       140995294       qF3     gneg
+chr2   140995294       146616369       qG1     gpos100
+chr2   146616369       147553214       qG2     gneg
+chr2   147553214       152237444       qG3     gpos100
+chr2   152237444       158795364       qH1     gneg
+chr2   158795364       163011170       qH2     gpos33
+chr2   163011170       173316474       qH3     gneg
+chr2   173316474       181748087       qH4     gpos33
+chr3   0       18490218        qA1     gpos100
+chr3   18490218        20436557        qA2     gneg
+chr3   20436557        35520683        qA3     gpos66
+chr3   35520683        46712131        qB      gneg
+chr3   46712131        56443825        qC      gpos100
+chr3   56443825        60823088        qD      gneg
+chr3   60823088        69581612        qE1     gpos33
+chr3   69581612        72501120        qE2     gneg
+chr3   72501120        83692569        qE3     gpos100
+chr3   83692569        92937678        qF1     gneg
+chr3   92937678        97316940        qF2.1   gpos33
+chr3   97316940        106075465       qF2.2   gneg
+chr3   106075465       108021804       qF2.3   gpos33
+chr3   108021804       114833990       qF3     gneg
+chr3   114833990       126512023       qG1     gpos100
+chr3   126512023       128458361       qG2     gneg
+chr3   128458361       138190056       qG3     gpos66
+chr3   138190056       143542487       qH1     gneg
+chr3   143542487       147921750       qH2     gpos33
+chr3   147921750       153760766       qH3     gneg
+chr3   153760766       159599783       qH4     gpos33
+chr4   0       14799183        qA1     gpos100
+chr4   14799183        17663541        qA2     gneg
+chr4   17663541        28166187        qA3     gpos100
+chr4   28166187        30075759        qA4     gneg
+chr4   30075759        43442763        qA5     gpos66
+chr4   43442763        51558444        qB1     gneg
+chr4   51558444        54900195        qB2     gpos33
+chr4   54900195        63015876        qB3     gneg
+chr4   63015876        69221985        qC1     gpos33
+chr4   69221985        71608950        qC2     gneg
+chr4   71608950        83543776        qC3     gpos100
+chr4   83543776        89272492        qC4     gneg
+chr4   89272492        96910780        qC5     gpos66
+chr4   96910780        105026461       qC6     gneg
+chr4   105026461       110277784       qC7     gpos66
+chr4   110277784       116961286       qD1     gneg
+chr4   116961286       119825644       qD2.1   gpos33
+chr4   119825644       130328290       qD2.2   gneg
+chr4   130328290       133192648       qD2.3   gpos33
+chr4   133192648       140830936       qD3     gneg
+chr4   140830936       147037045       qE1     gpos100
+chr4   147037045       155630120       qE2     gneg
+chr5   0       14964098        qA1     gpos100
+chr5   14964098        16412236        qA2     gneg
+chr5   16412236        25583780        qA3     gpos66
+chr5   25583780        33789899        qB1     gneg
+chr5   33789899        35720750        qB2     gpos33
+chr5   35720750        50684848        qB3     gneg
+chr5   50684848        58890967        qC1     gpos33
+chr5   58890967        61304531        qC2     gneg
+chr5   61304531        71924213        qC3.1   gpos100
+chr5   71924213        73855065        qC3.2   gneg
+chr5   73855065        78199480        qC3.3   gpos66
+chr5   78199480        82061183        qD      gneg
+chr5   82061183        91715440        qE1     gpos100
+chr5   91715440        94129004        qE2     gneg
+chr5   94129004        99921558        qE3     gpos33
+chr5   99921558        102335123       qE4     gneg
+chr5   102335123       108127677       qE5     gpos33
+chr5   108127677       125505339       qF      gneg
+chr5   125505339       127436191       qG1.1   gpos33
+chr5   127436191       128401616       qG1.2   gneg
+chr5   128401616       131297893       qG1.3   gpos33
+chr5   131297893       146744704       qG2     gneg
+chr5   146744704       152537259       qG3     gpos33
+chr6   0       16613004        qA1     gpos100
+chr6   16613004        21499181        qA2     gneg
+chr6   21499181        27362595        qA3.1   gpos100
+chr6   27362595        28339830        qA3.2   gneg
+chr6   28339830        34203243        qA3.3   gpos100
+chr6   34203243        41532510        qB1     gneg
+chr6   41532510        44464216        qB2.1   gpos66
+chr6   44464216        45930070        qB2.2   gneg
+chr6   45930070        50816247        qB2.3   gpos66
+chr6   50816247        62543074        qB3     gneg
+chr6   62543074        74269900        qC1     gpos100
+chr6   74269900        76712989        qC2     gneg
+chr6   76712989        85996727        qC3     gpos66
+chr6   85996727        94303229        qD1     gneg
+chr6   94303229        95769082        qD2     gpos33
+chr6   95769082        103098349       qD3     gneg
+chr6   103098349       108473144       qE1     gpos100
+chr6   108473144       109450380       qE2     gneg
+chr6   109450380       116779646       qE3     gpos100
+chr6   116779646       122643059       qF1     gneg
+chr6   122643059       125086148       qF2     gpos33
+chr6   125086148       131926797       qF3     gneg
+chr6   131926797       139256063       qG1     gpos66
+chr6   139256063       142676388       qG2     gneg
+chr6   142676388       149517037       qG3     gpos33
+chr7   0       15943333        qA1     gpos100
+chr7   15943333        19131999        qA2     gneg
+chr7   19131999        29760888        qA3     gpos33
+chr7   29760888        36138221        qB1     gneg
+chr7   36138221        39326888        qB2     gpos33
+chr7   39326888        49955776        qB3     gneg
+chr7   49955776        56864554        qB4     gpos33
+chr7   56864554        63773332        qB5     gneg
+chr7   63773332        74933665        qC      gpos100
+chr7   74933665        80779554        qD1     gneg
+chr7   80779554        84499665        qD2     gpos66
+chr7   84499665        94597109        qD3     gneg
+chr7   94597109        104694553       qE1     gpos100
+chr7   104694553       107351775       qE2     gneg
+chr7   107351775       116917775       qE3     gpos33
+chr7   116917775       124357997       qF1     gneg
+chr7   124357997       129140997       qF2     gpos33
+chr7   129140997       144021442       qF3     gneg
+chr7   144021442       147741553       qF4     gpos33
+chr7   147741553       152524553       qF5     gneg
+chr8   0       16228701        qA1.1   gpos100
+chr8   16228701        17183331        qA1.2   gneg
+chr8   17183331        20524534        qA1.3   gpos33
+chr8   20524534        30070829        qA2     gneg
+chr8   30070829        34366662        qA3     gpos33
+chr8   34366662        44867586        qA4     gneg
+chr8   44867586        49163419        qB1.1   gpos66
+chr8   49163419        51072678        qB1.2   gneg
+chr8   51072678        56800455        qB1.3   gpos66
+chr8   56800455        60618973        qB2     gneg
+chr8   60618973        68256009        qB3.1   gpos100
+chr8   68256009        69210638        qB3.2   gneg
+chr8   69210638        75893045        qB3.3   gpos100
+chr8   75893045        81620822        qC1     gneg
+chr8   81620822        86393969        qC2     gpos33
+chr8   86393969        91644432        qC3     gneg
+chr8   91644432        93076376        qC4     gpos33
+chr8   93076376        97372209        qC5     gneg
+chr8   97372209        105009245       qD1     gpos100
+chr8   105009245       105963874       qD2     gneg
+chr8   105963874       112646281       qD3     gpos33
+chr8   112646281       126011094       qE1     gneg
+chr8   126011094       131738871       qE2     gpos33
+chr9   0       14352094        qA1     gpos100
+chr9   14352094        19444773        qA2     gneg
+chr9   19444773        24074481        qA3     gpos33
+chr9   24074481        37963604        qA4     gneg
+chr9   37963604        43982225        qA5.1   gpos66
+chr9   43982225        46297079        qA5.2   gneg
+chr9   46297079        54630553        qA5.3   gpos66
+chr9   54630553        62964027        qB      gneg
+chr9   62964027        69445618        qC      gpos33
+chr9   69445618        77316122        qD      gneg
+chr9   77316122        82408800        qE1     gpos33
+chr9   82408800        84260683        qE2     gneg
+chr9   84260683        90742275        qE3.1   gpos100
+chr9   90742275        91205245        qE3.2   gneg
+chr9   91205245        100464661       qE3.3   gpos100
+chr9   100464661       101390603       qE4     gpos66
+chr9   101390603       107872194       qF1     gneg
+chr9   107872194       110650019       qF2     gpos33
+chr9   110650019       119446464       qF3     gneg
+chr9   119446464       124076172       qF4     gpos33
+chrX   0       15368327        qA1.1   gpos100
+chrX   15368327        17769628        qA1.2   gneg
+chrX   17769628        20651189        qA1.3   gpos33
+chrX   20651189        27374832        qA2     gneg
+chrX   27374832        32657694        qA3.1   gpos66
+chrX   32657694        33618215        qA3.2   gneg
+chrX   33618215        38901077        qA3.3   gpos66
+chrX   38901077        46585241        qA4     gneg
+chrX   46585241        54749664        qA5     gpos66
+chrX   54749664        61473308        qA6     gneg
+chrX   61473308        67716690        qA7.1   gpos66
+chrX   67716690        69157471        qA7.2   gneg
+chrX   69157471        75400854        qA7.3   gpos66
+chrX   75400854        80203456        qB      gneg
+chrX   80203456        88848140        qC1     gpos100
+chrX   88848140        89808660        qC2     gneg
+chrX   89808660        98453344        qC3     gpos100
+chrX   98453344        107098028       qD      gneg
+chrX   107098028       117183493       qE1     gpos100
+chrX   117183493       118144013       qE2     gneg
+chrX   118144013       131591300       qE3     gpos100
+chrX   131591300       137834682       qF1     gneg
+chrX   137834682       145038586       qF2     gpos33
+chrX   145038586       152242489       qF3     gneg
+chrX   152242489       159446392       qF4     gpos33
+chrX   159446392       166650296       qF5     gneg
+chrY   0       3578074 qA1     gpos100
+chrY   3578074 5665285 qA2     gpos66
+chrY   5665285 7851886 qB      gpos33
+chrY   7851886 9442142 qC1     gpos100
+chrY   9442142 10734224        qC2     gpos33
+chrY   10734224        12523262        qC3     gpos100
+chrY   12523262        14411690        qD      gpos33
+chrY   14411690        15902555        qE      gpos66
+chr10  0       12754055        qA1     gpos100
+chr10  12754055        17659461        qA2     gneg
+chr10  17659461        23545948        qA3     gpos33
+chr10  23545948        33356759        qA4     gneg
+chr10  33356759        41205409        qB1     gpos100
+chr10  41205409        48072977        qB2     gneg
+chr10  48072977        55921626        qB3     gpos100
+chr10  55921626        63770276        qB4     gneg
+chr10  63770276        67694600        qB5.1   gpos100
+chr10  67694600        68185141        qB5.2   gneg
+chr10  68185141        74562168        qB5.3   gpos100
+chr10  74562168        88787845        qC1     gneg
+chr10  88787845        95655414        qC2     gpos33
+chr10  95655414        98598657        qC3     gneg
+chr10  98598657        111352712       qD1     gpos100
+chr10  111352712       124106767       qD2     gneg
+chr10  124106767       129993255       qD3     gpos33
+chr11  0       13021480        qA1     gpos100
+chr11  13021480        17206956        qA2     gneg
+chr11  17206956        21857485        qA3.1   gpos100
+chr11  21857485        25577908        qA3.2   gneg
+chr11  25577908        30228437        qA3.3   gpos100
+chr11  30228437        36274125        qA4     gneg
+chr11  36274125        43249918        qA5     gpos100
+chr11  43249918        47900447        qB1.1   gneg
+chr11  47900447        49760658        qB1.2   gpos33
+chr11  49760658        59991822        qB1.3   gneg
+chr11  59991822        62782139        qB2     gpos33
+chr11  62782139        70688038        qB3     gneg
+chr11  70688038        73943408        qB4     gpos33
+chr11  73943408        81849307        qB5     gneg
+chr11  81849307        90220259        qC      gpos100
+chr11  90220259        102311634       qD      gneg
+chr11  102311634       110217533       qE1     gpos66
+chr11  110217533       121843856       qE2     gneg
+chr12  0       17766671        qA1.1   gpos100
+chr12  17766671        21320005        qA1.2   gneg
+chr12  21320005        26205839        qA1.3   gpos66
+chr12  26205839        31980007        qA2     gneg
+chr12  31980007        39530843        qA3     gpos33
+chr12  39530843        44416677        qB1     gneg
+chr12  44416677        45305011        qB2     gpos33
+chr12  45305011        52411679        qB3     gneg
+chr12  52411679        66625016        qC1     gpos100
+chr12  66625016        71955017        qC2     gneg
+chr12  71955017        81726686        qC3     gpos100
+chr12  81726686        86168354        qD1     gneg
+chr12  86168354        89277522        qD2     gpos33
+chr12  89277522        96384190        qD3     gneg
+chr12  96384190        107044193       qE      gpos100
+chr12  107044193       115483361       qF1     gneg
+chr12  115483361       121257530       qF2     gpos66
+chr13  0       16267960        qA1     gpos100
+chr13  16267960        21197645        qA2     gneg
+chr13  21197645        29578109        qA3.1   gpos66
+chr13  29578109        33028888        qA3.2   gneg
+chr13  33028888        41409353        qA3.3   gpos33
+chr13  41409353        44367164        qA4     gneg
+chr13  44367164        52747628        qA5     gpos33
+chr13  52747628        59156219        qB1     gneg
+chr13  59156219        61621061        qB2     gpos33
+chr13  61621061        69508557        qB3     gneg
+chr13  69508557        78381990        qC1     gpos33
+chr13  78381990        80846832        qC2     gneg
+chr13  80846832        94649950        qC3     gpos100
+chr13  94649950        106481194       qD1     gneg
+chr13  106481194       110424942       qD2.1   gpos33
+chr13  110424942       116340564       qD2.2   gneg
+chr13  116340564       120284312       qD2.3   gpos33
+chr14  0       15023383        qA1     gpos100
+chr14  15023383        19530398        qA2     gneg
+chr14  19530398        30046767        qA3     gpos33
+chr14  30046767        43567812        qB      gneg
+chr14  43567812        52081063        qC1     gpos100
+chr14  52081063        55085740        qC2     gneg
+chr14  55085740        60093534        qC3     gpos66
+chr14  60093534        69107564        qD1     gneg
+chr14  69107564        73113800        qD2     gpos33
+chr14  73113800        85132507        qD3     gneg
+chr14  85132507        89138743        qE1     gpos66
+chr14  89138743        99154332        qE2.1   gpos100
+chr14  99154332        100155891       qE2.2   gneg
+chr14  100155891       107667583       qE2.3   gpos100
+chr14  107667583       111173039       qE3     gneg
+chr14  111173039       121188628       qE4     gpos100
+chr14  121188628       125194864       qE5     gneg
+chr15  0       16413299        qA1     gpos100
+chr15  16413299        24164024        qA2     gneg
+chr15  24164024        29635124        qB1     gpos33
+chr15  29635124        31914749        qB2     gneg
+chr15  31914749        42856949        qB3.1   gpos100
+chr15  42856949        44680649        qB3.2   gneg
+chr15  44680649        49695824        qB3.3   gpos66
+chr15  49695824        53343224        qC      gneg
+chr15  53343224        66109124        qD1     gpos100
+chr15  66109124        68388749        qD2     gneg
+chr15  68388749        77051324        qD3     gpos66
+chr15  77051324        83434274        qE1     gneg
+chr15  83434274        86625749        qE2     gpos33
+chr15  86625749        95288324        qE3     gneg
+chr15  95288324        100759424       qF1     gpos66
+chr15  100759424       101671274       qF2     gneg
+chr15  101671274       103494974       qF3     gpos33
+chr16  0       15450152        qA1     gpos100
+chr16  15450152        16386525        qA2     gneg
+chr16  16386525        20600202        qA3     gpos33
+chr16  20600202        26218440        qB1     gneg
+chr16  26218440        32304863        qB2     gpos33
+chr16  32304863        38391287        qB3     gneg
+chr16  38391287        44945897        qB4     gpos33
+chr16  44945897        53841439        qB5     gneg
+chr16  53841439        58055117        qC1.1   gpos66
+chr16  58055117        58991490        qC1.2   gneg
+chr16  58991490        66950659        qC1.3   gpos66
+chr16  66950659        70696150        qC2     gneg
+chr16  70696150        79123506        qC3.1   gpos100
+chr16  79123506        79591692        qC3.2   gneg
+chr16  79591692        91764540        qC3.3   gpos100
+chr16  91764540        98319150        qC4     gneg
+chr17  0       13984976        qA1     gpos100
+chr17  13984976        16170128        qA2     gneg
+chr17  16170128        17481220        qA3.1   gpos33
+chr17  17481220        21851525        qA3.2   gneg
+chr17  21851525        31466196        qA3.3   gpos66
+chr17  31466196        40206806        qB1     gneg
+chr17  40206806        41517898        qB2     gpos33
+chr17  41517898        45888203        qB3     gneg
+chr17  45888203        55939905        qC      gpos66
+chr17  55939905        60310210        qD      gneg
+chr17  60310210        68176759        qE1.1   gpos100
+chr17  68176759        69050820        qE1.2   gneg
+chr17  69050820        73421125        qE1.3   gpos100
+chr17  73421125        78665491        qE2     gneg
+chr17  78665491        83035796        qE3     gpos33
+chr17  83035796        89154223        qE4     gneg
+chr17  89154223        95272651        qE5     gpos33
+chr18  0       19420992        qA1     gpos100
+chr18  19420992        29553684        qA2     gneg
+chr18  29553684        35464421        qB1     gpos66
+chr18  35464421        37153203        qB2     gneg
+chr18  37153203        45597113        qB3     gpos100
+chr18  45597113        49819068        qC      gneg
+chr18  49819068        54041023        qD1     gpos100
+chr18  54041023        54463218        qD2     gneg
+chr18  54463218        60796150        qD3     gpos100
+chr18  60796150        67973474        qE1     gneg
+chr18  67973474        75150797        qE2     gpos33
+chr18  75150797        83594707        qE3     gneg
+chr18  83594707        90772031        qE4     gpos33
+chr19  0       16655891        qA      gpos100
+chr19  16655891        25593199        qB      gneg
+chr19  25593199        34936748        qC1     gpos66
+chr19  34936748        38186678        qC2     gneg
+chr19  38186678        47530227        qC3     gpos66
+chr19  47530227        51592639        qD1     gneg
+chr19  51592639        58904982        qD2     gpos33
+chr19  58904982        61342430        qD3     gneg