bp_test/out/find_SNPs.out.1

   1 STRAND: -
   2 MAPQ: 42
   3 NM: 1
   4 Q_ID: M01168:19:000000000-A2YGD:1:1101:14450:1450
   5 ALIGN: 156:T>G
   6 REC_TYPE: SAM
   7 S_ID: gi|116048575|ref|NC_008463.1|
   8 S_BEG: 6486413
   9 SEQ: CTCGCCGGGCACTACCTGCGCTACGCCGGGCAGGCCGAATGGGAAAGCCTGCAGATCGAACCGGTGAAGGGCGGCTACCAGGCGAGCTTCGCCCTGATGCGCATCGGCAATCCGGAGAAACTGATGGAATATGGGCCCGCGGCGGTCGGCGAGTGGGCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCGCAGCGAAGGCCTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGG
  10 CIGAR: 236M
  11 MD: 156T79
  12 S_END: 6486648
  13 ---
  14 STRAND: -
  15 MAPQ: 42
  16 NM: 1
  17 Q_ID: M01168:19:000000000-A2YGD:1:1101:14490:1470
  18 ALIGN: 103:C>A
  19 REC_TYPE: SAM
  20 S_ID: gi|116048575|ref|NC_008463.1|
  21 S_BEG: 306977
  22 SEQ: GCAAGGGATGGTGACCCGGTAGGCTGGGCCGGCCAGATCCACGGCGGTCCAGATACCGGCTATCACCCAGCCGACCGGCCCGGCTAGCGCGGCGACGGCACGAACGCCAGCGAAGGTTCCCCCAGCAACCACCGCACTGCGCAGCCCGTGCCCAAGCAGCTGCTGAGCCATCGAGTTCACGATCACCGTCGAAGTGCGATAGAGGATTAGCCGTGCTACGGTCGGCACTACCA
  23 CIGAR: 233M
  24 MD: 103C129
  25 S_END: 307209
  26 ---
  27 STRAND: +
  28 MAPQ: 42
  29 NM: 1
  30 Q_ID: M01168:19:000000000-A2YGD:1:1101:16598:1488
  31 ALIGN: 6:T>A
  32 REC_TYPE: SAM
  33 S_ID: gi|116048575|ref|NC_008463.1|
  34 S_BEG: 6526264
  35 SEQ: GCCAGCACCAGATCACGAGCCGCGCGGTTGGCAGCGTCCAGGCCGTCAGCGATCTTCTTCTGACGCTCTTGCAGAGCCGCGATGACCGGAGGCCACACGAACTTCATGCAGAACAGCACAAAGATGAAGAACGCAACGGACTGGCCAATCAGGGTTGCATTAATGTTCAC
  36 CIGAR: 170M
  37 MD: 6T163
  38 S_END: 6526433
  39 ---
  40 STRAND: -
  41 MAPQ: 8
  42 NM: 10
  43 Q_ID: M01168:19:000000000-A2YGD:1:1101:15847:1490
  44 ALIGN: 54:C>G,62:C>G,88:C>G,92:T>G,97:G>C,123:T>A,128:C>G,143:T>G,144:G>T,148:T>G
  45 REC_TYPE: SAM
  46 S_ID: gi|116048575|ref|NC_008463.1|
  47 S_BEG: 1410225
  48 SEQ: GTCAGCGGCCGCCAGCGACGACAACGACGAGGAGCCCGCCGGGCAGGCGGGCGGGGAACAGGGCGAGGAGCGCCGCAGCCGGGTCCTGGGGGGCACCCCCGAGCGCCTGGACCGGCTGCTGGAAATCTGCAGCAAGTCGCTGGGTGAGGTCCAG
  49 CIGAR: 154M
  50 MD: 54C7C25C3T4G25T4C14T0G3T5
  51 S_END: 1410378
  52 ---
  53 STRAND: -
  54 MAPQ: 42
  55 NM: 3
  56 Q_ID: M01168:19:000000000-A2YGD:1:1101:16182:1497
  57 ALIGN: 201:C>G,220:T>G,222:C>A
  58 REC_TYPE: SAM
  59 S_ID: gi|116048575|ref|NC_008463.1|
  60 S_BEG: 2683318
  61 SEQ: TTGCAGCGCGCCTTGCGCTGACTGGCTCTTGCCGACCAGATCGGCCAGCACGCTTTCGTCTTCGCCCAGGTTCTGCGACACCTGCGCCTGCATCTGCATGGTGGTCTGCAAGCCGTTGAGCGTGTTCTTCCACCGCTCTTGGGCGTCGCGGTACATCTGGTCGCCGCTGACGGTGGCGGCGTACTGCTCCGGGTACAGGCGGGCGAACTCCCGATCCAGAGTAGTCACGTCGT
  62 CIGAR: 233M
  63 MD: 201C18T1C10
  64 S_END: 2683550
  65 ---
  66 STRAND: +
  67 MAPQ: 42
  68 NM: 1
  69 Q_ID: M01168:19:000000000-A2YGD:1:1101:16598:1488
  70 ALIGN: 6:T>A
  71 REC_TYPE: SAM
  72 S_ID: gi|116048575|ref|NC_008463.1|
  73 S_BEG: 6526264
  74 SEQ: GCCAGCACCAGATCACGAGCCGCGCGGTTGGCAGCGTCCAGGCCGTCAGCGATCTTCTTCTGACGCTCTTGCAGAGCCGCGATGACCGGAGGCCACACGAACTTCATGCAGAACAGCACAAAGATGAAGAACGCAACGGACTGGCCAATCAGGGTTGCATTAATGTTCAC
  75 CIGAR: 170M
  76 MD: 6T163
  77 S_END: 6526433
  78 ---
  79 STRAND: -
  80 MAPQ: 8
  81 NM: 10
  82 Q_ID: M01168:19:000000000-A2YGD:1:1101:15847:1490
  83 ALIGN: 54:C>G,62:C>G,88:C>G,92:T>G,97:G>C,123:T>A,128:C>G,143:T>G,144:G>T,148:T>G
  84 REC_TYPE: SAM
  85 S_ID: gi|116048575|ref|NC_008463.1|
  86 S_BEG: 1410225
  87 SEQ: GTCAGCGGCCGCCAGCGACGACAACGACGAGGAGCCCGCCGGGCAGGCGGGCGGGGAACAGGGCGAGGAGCGCCGCAGCCGGGTCCTGGGGGGCACCCCCGAGCGCCTGGACCGGCTGCTGGAAATCTGCAGCAAGTCGCTGGGTGAGGTCCAG
  88 CIGAR: 154M
  89 MD: 54C7C25C3T4G25T4C14T0G3T5
  90 S_END: 1410378
  91 ---
  92 STRAND: -
  93 MAPQ: 42
  94 NM: 3
  95 Q_ID: M01168:19:000000000-A2YGD:1:1101:16182:1497
  96 ALIGN: 201:C>G,220:T>G,222:C>A
  97 REC_TYPE: SAM
  98 S_ID: gi|116048575|ref|NC_008463.1|
  99 S_BEG: 2683318
 100 SEQ: TTGCAGCGCGCCTTGCGCTGACTGGCTCTTGCCGACCAGATCGGCCAGCACGCTTTCGTCTTCGCCCAGGTTCTGCGACACCTGCGCCTGCATCTGCATGGTGGTCTGCAAGCCGTTGAGCGTGTTCTTCCACCGCTCTTGGGCGTCGCGGTACATCTGGTCGCCGCTGACGGTGGCGGCGTACTGCTCCGGGTACAGGCGGGCGAACTCCCGATCCAGAGTAGTCACGTCGT
 101 CIGAR: 233M
 102 MD: 201C18T1C10
 103 S_END: 2683550
 104 ---
 105 STRAND: -
 106 MAPQ: 42
 107 NM: 3
 108 Q_ID: M01168:19:000000000-A2YGD:1:1101:16182:1497
 109 ALIGN: 201:C>G,220:T>G,222:C>A
 110 REC_TYPE: SAM
 111 S_ID: gi|116048575|ref|NC_008463.1|
 112 S_BEG: 2683318
 113 SEQ: TTGCAGCGCGCCTTGCGCTGACTGGCTCTTGCCGACCAGATCGGCCAGCACGCTTTCGTCTTCGCCCAGGTTCTGCGACACCTGCGCCTGCATCTGCATGGTGGTCTGCAAGCCGTTGAGCGTGTTCTTCCACCGCTCTTGGGCGTCGCGGTACATCTGGTCGCCGCTGACGGTGGCGGCGTACTGCTCCGGGTACAGGCGGGCGAACTCCCGATCCAGAGTAGTCACGTCGT
 114 CIGAR: 233M
 115 MD: 201C18T1C10
 116 S_END: 2683550
 117 ---
 118 REC_TYPE: SNP
 119 S_ID: gi|116048575|ref|NC_008463.1|
 120 POS: 6486569
 121 EVENT: T>G
 122 SNP_COUNT: 1
 123 TYPE: MISMATCH
 124 ---
 125 REC_TYPE: SNP
 126 S_ID: gi|116048575|ref|NC_008463.1|
 127 POS: 307080
 128 EVENT: C>A
 129 SNP_COUNT: 1
 130 TYPE: MISMATCH
 131 ---
 132 REC_TYPE: SNP
 133 S_ID: gi|116048575|ref|NC_008463.1|
 134 POS: 6526270
 135 EVENT: T>A
 136 SNP_COUNT: 2
 137 TYPE: MISMATCH
 138 ---
 139 REC_TYPE: SNP
 140 S_ID: gi|116048575|ref|NC_008463.1|
 141 POS: 1410279
 142 EVENT: C>G
 143 SNP_COUNT: 2
 144 TYPE: MISMATCH
 145 ---
 146 REC_TYPE: SNP
 147 S_ID: gi|116048575|ref|NC_008463.1|
 148 POS: 1410287
 149 EVENT: C>G
 150 SNP_COUNT: 2
 151 TYPE: MISMATCH
 152 ---
 153 REC_TYPE: SNP
 154 S_ID: gi|116048575|ref|NC_008463.1|
 155 POS: 1410313
 156 EVENT: C>G
 157 SNP_COUNT: 2
 158 TYPE: MISMATCH
 159 ---
 160 REC_TYPE: SNP
 161 S_ID: gi|116048575|ref|NC_008463.1|
 162 POS: 1410317
 163 EVENT: T>G
 164 SNP_COUNT: 2
 165 TYPE: MISMATCH
 166 ---
 167 REC_TYPE: SNP
 168 S_ID: gi|116048575|ref|NC_008463.1|
 169 POS: 1410322
 170 EVENT: G>C
 171 SNP_COUNT: 2
 172 TYPE: MISMATCH
 173 ---
 174 REC_TYPE: SNP
 175 S_ID: gi|116048575|ref|NC_008463.1|
 176 POS: 1410348
 177 EVENT: T>A
 178 SNP_COUNT: 2
 179 TYPE: MISMATCH
 180 ---
 181 REC_TYPE: SNP
 182 S_ID: gi|116048575|ref|NC_008463.1|
 183 POS: 1410353
 184 EVENT: C>G
 185 SNP_COUNT: 2
 186 TYPE: MISMATCH
 187 ---
 188 REC_TYPE: SNP
 189 S_ID: gi|116048575|ref|NC_008463.1|
 190 POS: 1410368
 191 EVENT: T>G
 192 SNP_COUNT: 2
 193 TYPE: MISMATCH
 194 ---
 195 REC_TYPE: SNP
 196 S_ID: gi|116048575|ref|NC_008463.1|
 197 POS: 1410369
 198 EVENT: G>T
 199 SNP_COUNT: 2
 200 TYPE: MISMATCH
 201 ---
 202 REC_TYPE: SNP
 203 S_ID: gi|116048575|ref|NC_008463.1|
 204 POS: 1410373
 205 EVENT: T>G
 206 SNP_COUNT: 2
 207 TYPE: MISMATCH
 208 ---
 209 REC_TYPE: SNP
 210 S_ID: gi|116048575|ref|NC_008463.1|
 211 POS: 2683519
 212 EVENT: C>G
 213 SNP_COUNT: 3
 214 TYPE: MISMATCH
 215 ---
 216 REC_TYPE: SNP
 217 S_ID: gi|116048575|ref|NC_008463.1|
 218 POS: 2683538
 219 EVENT: T>G
 220 SNP_COUNT: 3
 221 TYPE: MISMATCH
 222 ---
 223 REC_TYPE: SNP
 224 S_ID: gi|116048575|ref|NC_008463.1|
 225 POS: 2683540
 226 EVENT: C>A
 227 SNP_COUNT: 3
 228 TYPE: MISMATCH
 229 ---