bp_test/out/find_SNPs.out.1

   1 MAPQ: 37
   2 STRAND: -
   3 Q_ID: ID00002249
   4 ALIGN: 63:->A
   5 S_ID: gi|48994873|gb|U00096.2|
   6 REC_TYPE: SAM
   7 S_BEG: 2937
   8 SEQ: TCAACAACCTCGGACGCTTTGCCGATAAGCTGCCGTCAGAACCACGGGAAAATATCGTTTATCAAGTGCTGGGAGCGTTTTTGCCAGGAACTGGGTAAGC
   9 CIGAR: 63M1I36M
  10 ---
  11 MAPQ: 37
  12 STRAND: -
  13 Q_ID: ID00004198
  14 ALIGN: 8:G>C
  15 S_ID: gi|48994873|gb|U00096.2|
  16 REC_TYPE: SAM
  17 S_BEG: 993
  18 SEQ: CGCCGATTCTTGCGAGATTTGGACGGACGTTGACGGGGTCTATACCTGCGACCCGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAG
  19 CIGAR: 100M
  20 ---
  21 MAPQ: 37
  22 STRAND: -
  23 Q_ID: ID00004198
  24 ALIGN: 8:G>C
  25 S_ID: gi|48994873|gb|U00096.2|
  26 REC_TYPE: SAM
  27 S_BEG: 993
  28 SEQ: CGCCGATTCTTGCGAGATTTGGACGGACGTTGACGGGGTCTATACCTGCGACCCGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAG
  29 CIGAR: 100M
  30 ---
  31 MAPQ: 37
  32 STRAND: -
  33 Q_ID: ID00009237
  34 ALIGN: 61:G>-
  35 S_ID: gi|48994873|gb|U00096.2|
  36 REC_TYPE: SAM
  37 S_BEG: 5440
  38 SEQ: CCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATG
  39 CIGAR: 61M1D39M
  40 ---
  41 MAPQ: 37
  42 STRAND: -
  43 Q_ID: ID00009237
  44 ALIGN: 61:G>-
  45 S_ID: gi|48994873|gb|U00096.2|
  46 REC_TYPE: SAM
  47 S_BEG: 5440
  48 SEQ: CCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATG
  49 CIGAR: 61M1D39M
  50 ---
  51 MAPQ: 37
  52 STRAND: -
  53 Q_ID: ID00009237
  54 ALIGN: 61:G>-
  55 S_ID: gi|48994873|gb|U00096.2|
  56 REC_TYPE: SAM
  57 S_BEG: 5440
  58 SEQ: CCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATG
  59 CIGAR: 61M1D39M
  60 ---
  61 REC_TYPE: SNP
  62 S_ID: gi|48994873|gb|U00096.2|
  63 POS: 3000
  64 EVENT: ->A
  65 SNP_COUNT: 1
  66 TYPE: INSERTION
  67 ---
  68 REC_TYPE: SNP
  69 S_ID: gi|48994873|gb|U00096.2|
  70 POS: 1001
  71 EVENT: G>C
  72 SNP_COUNT: 2
  73 TYPE: MISMATCH
  74 ---
  75 REC_TYPE: SNP
  76 S_ID: gi|48994873|gb|U00096.2|
  77 POS: 5501
  78 EVENT: G>-
  79 SNP_COUNT: 3
  80 TYPE: DELETION
  81 ---