bp_test/in/find_SNPs.in

   1 STRAND: -
   2 MAPQ: 42
   3 NM: 1
   4 Q_ID: M01168:19:000000000-A2YGD:1:1101:14450:1450
   5 ALIGN: 156:T>G
   6 REC_TYPE: SAM
   7 S_ID: gi|116048575|ref|NC_008463.1|
   8 S_BEG: 6486413
   9 SEQ: CTCGCCGGGCACTACCTGCGCTACGCCGGGCAGGCCGAATGGGAAAGCCTGCAGATCGAACCGGTGAAGGGCGGCTACCAGGCGAGCTTCGCCCTGATGCGCATCGGCAATCCGGAGAAACTGATGGAATATGGGCCCGCGGCGGTCGGCGAGTGGGCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCGCAGCGAAGGCCTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGG
  10 CIGAR: 236M
  11 MD: 156T79
  12 S_END: 6486648
  13 ---
  14 STRAND: -
  15 MAPQ: 42
  16 NM: 1
  17 Q_ID: M01168:19:000000000-A2YGD:1:1101:14490:1470
  18 ALIGN: 103:C>A
  19 REC_TYPE: SAM
  20 S_ID: gi|116048575|ref|NC_008463.1|
  21 S_BEG: 306977
  22 SEQ: GCAAGGGATGGTGACCCGGTAGGCTGGGCCGGCCAGATCCACGGCGGTCCAGATACCGGCTATCACCCAGCCGACCGGCCCGGCTAGCGCGGCGACGGCACGAACGCCAGCGAAGGTTCCCCCAGCAACCACCGCACTGCGCAGCCCGTGCCCAAGCAGCTGCTGAGCCATCGAGTTCACGATCACCGTCGAAGTGCGATAGAGGATTAGCCGTGCTACGGTCGGCACTACCA
  23 CIGAR: 233M
  24 MD: 103C129
  25 S_END: 307209
  26 ---
  27 STRAND: +
  28 MAPQ: 42
  29 NM: 1
  30 Q_ID: M01168:19:000000000-A2YGD:1:1101:16598:1488
  31 ALIGN: 6:T>A
  32 REC_TYPE: SAM
  33 S_ID: gi|116048575|ref|NC_008463.1|
  34 S_BEG: 6526264
  35 SEQ: GCCAGCACCAGATCACGAGCCGCGCGGTTGGCAGCGTCCAGGCCGTCAGCGATCTTCTTCTGACGCTCTTGCAGAGCCGCGATGACCGGAGGCCACACGAACTTCATGCAGAACAGCACAAAGATGAAGAACGCAACGGACTGGCCAATCAGGGTTGCATTAATGTTCAC
  36 CIGAR: 170M
  37 MD: 6T163
  38 S_END: 6526433
  39 ---
  40 STRAND: -
  41 MAPQ: 8
  42 NM: 10
  43 Q_ID: M01168:19:000000000-A2YGD:1:1101:15847:1490
  44 ALIGN: 54:C>G,62:C>G,88:C>G,92:T>G,97:G>C,123:T>A,128:C>G,143:T>G,144:G>T,148:T>G
  45 REC_TYPE: SAM
  46 S_ID: gi|116048575|ref|NC_008463.1|
  47 S_BEG: 1410225
  48 SEQ: GTCAGCGGCCGCCAGCGACGACAACGACGAGGAGCCCGCCGGGCAGGCGGGCGGGGAACAGGGCGAGGAGCGCCGCAGCCGGGTCCTGGGGGGCACCCCCGAGCGCCTGGACCGGCTGCTGGAAATCTGCAGCAAGTCGCTGGGTGAGGTCCAG
  49 CIGAR: 154M
  50 MD: 54C7C25C3T4G25T4C14T0G3T5
  51 S_END: 1410378
  52 ---
  53 STRAND: -
  54 MAPQ: 42
  55 NM: 3
  56 Q_ID: M01168:19:000000000-A2YGD:1:1101:16182:1497
  57 ALIGN: 201:C>G,220:T>G,222:C>A
  58 REC_TYPE: SAM
  59 S_ID: gi|116048575|ref|NC_008463.1|
  60 S_BEG: 2683318
  61 SEQ: TTGCAGCGCGCCTTGCGCTGACTGGCTCTTGCCGACCAGATCGGCCAGCACGCTTTCGTCTTCGCCCAGGTTCTGCGACACCTGCGCCTGCATCTGCATGGTGGTCTGCAAGCCGTTGAGCGTGTTCTTCCACCGCTCTTGGGCGTCGCGGTACATCTGGTCGCCGCTGACGGTGGCGGCGTACTGCTCCGGGTACAGGCGGGCGAACTCCCGATCCAGAGTAGTCACGTCGT
  62 CIGAR: 233M
  63 MD: 201C18T1C10
  64 S_END: 2683550
  65 ---
  66 STRAND: +
  67 MAPQ: 42
  68 NM: 1
  69 Q_ID: M01168:19:000000000-A2YGD:1:1101:16598:1488
  70 ALIGN: 6:T>A
  71 REC_TYPE: SAM
  72 S_ID: gi|116048575|ref|NC_008463.1|
  73 S_BEG: 6526264
  74 SEQ: GCCAGCACCAGATCACGAGCCGCGCGGTTGGCAGCGTCCAGGCCGTCAGCGATCTTCTTCTGACGCTCTTGCAGAGCCGCGATGACCGGAGGCCACACGAACTTCATGCAGAACAGCACAAAGATGAAGAACGCAACGGACTGGCCAATCAGGGTTGCATTAATGTTCAC
  75 CIGAR: 170M
  76 MD: 6T163
  77 S_END: 6526433
  78 ---
  79 STRAND: -
  80 MAPQ: 8
  81 NM: 10
  82 Q_ID: M01168:19:000000000-A2YGD:1:1101:15847:1490
  83 ALIGN: 54:C>G,62:C>G,88:C>G,92:T>G,97:G>C,123:T>A,128:C>G,143:T>G,144:G>T,148:T>G
  84 REC_TYPE: SAM
  85 S_ID: gi|116048575|ref|NC_008463.1|
  86 S_BEG: 1410225
  87 SEQ: GTCAGCGGCCGCCAGCGACGACAACGACGAGGAGCCCGCCGGGCAGGCGGGCGGGGAACAGGGCGAGGAGCGCCGCAGCCGGGTCCTGGGGGGCACCCCCGAGCGCCTGGACCGGCTGCTGGAAATCTGCAGCAAGTCGCTGGGTGAGGTCCAG
  88 CIGAR: 154M
  89 MD: 54C7C25C3T4G25T4C14T0G3T5
  90 S_END: 1410378
  91 ---
  92 STRAND: -
  93 MAPQ: 42
  94 NM: 3
  95 Q_ID: M01168:19:000000000-A2YGD:1:1101:16182:1497
  96 ALIGN: 201:C>G,220:T>G,222:C>A
  97 REC_TYPE: SAM
  98 S_ID: gi|116048575|ref|NC_008463.1|
  99 S_BEG: 2683318
 100 SEQ: TTGCAGCGCGCCTTGCGCTGACTGGCTCTTGCCGACCAGATCGGCCAGCACGCTTTCGTCTTCGCCCAGGTTCTGCGACACCTGCGCCTGCATCTGCATGGTGGTCTGCAAGCCGTTGAGCGTGTTCTTCCACCGCTCTTGGGCGTCGCGGTACATCTGGTCGCCGCTGACGGTGGCGGCGTACTGCTCCGGGTACAGGCGGGCGAACTCCCGATCCAGAGTAGTCACGTCGT
 101 CIGAR: 233M
 102 MD: 201C18T1C10
 103 S_END: 2683550
 104 ---
 105 STRAND: -
 106 MAPQ: 42
 107 NM: 3
 108 Q_ID: M01168:19:000000000-A2YGD:1:1101:16182:1497
 109 ALIGN: 201:C>G,220:T>G,222:C>A
 110 REC_TYPE: SAM
 111 S_ID: gi|116048575|ref|NC_008463.1|
 112 S_BEG: 2683318
 113 SEQ: TTGCAGCGCGCCTTGCGCTGACTGGCTCTTGCCGACCAGATCGGCCAGCACGCTTTCGTCTTCGCCCAGGTTCTGCGACACCTGCGCCTGCATCTGCATGGTGGTCTGCAAGCCGTTGAGCGTGTTCTTCCACCGCTCTTGGGCGTCGCGGTACATCTGGTCGCCGCTGACGGTGGCGGCGTACTGCTCCGGGTACAGGCGGGCGAACTCCCGATCCAGAGTAGTCACGTCGT
 114 CIGAR: 233M
 115 MD: 201C18T1C10
 116 S_END: 2683550
 117 ---