* fix if loop

[bin.git] / genotypeizer

diff --git a/genotypeizer b/genotypeizer
index 00478d0ac4f140feebbddb93e578a755206ef6a1..a4f2e4193079bb4a3ba40cea31a81c78899523db 100755 (executable)
--- a/genotypeizer
+++ b/genotypeizer
@@ -209,7 +209,7 @@ else {
 
 @valid_snps{@{$options{snps}}} = (1) x $options{snps} if defined $options{snps} and @{$options{snps}};
 
-if ($options{output} eq 'pedmap') {
+if ($options{output_format} eq 'pedmap') {
     if (keys %valid_snps) {
        %snps = map {($_,$snps{$_})} keys %valid_snps;
     }