Updated README

diff --git a/README b/README
index 7de7fd1d2484a4242e567da85a758a90ed0d3cb1..d71ac8e8e3d3f79e2e18937a6e252accc441f594 100644 (file)
--- a/README
+++ b/README
@@ -47,11 +47,13 @@ of features we hope you find useful.
 usage: bamtools [--help] COMMAND [ARGS]
 
 Available bamtools commands:
+       count           Prints number of alignments in BAM file
        coverage        Prints coverage statistics from the input BAM file      
-       dump            Dump BAM file contents to text output
+       filter          Filters BAM file(s) by user-specified criteria
        header          Prints BAM header information
        index           Generates index for BAM file
        merge           Merge multiple BAM files into single file
+       sam             Prints the BAM file in SAM (text) format
        sort            Sorts the BAM file according to some criteria
        stats           Prints some basic statistics from the input BAM file