Minor formatting cleanup

diff --git a/src/toolkit/bamtools_coverage.cpp b/src/toolkit/bamtools_coverage.cpp
index d46ba2050b37337b96456e98ce3ae494d38d8acb..8a7fce24eb69249183988a7afe3319219c106222 100644 (file)
--- a/src/toolkit/bamtools_coverage.cpp
+++ b/src/toolkit/bamtools_coverage.cpp
@@ -36,12 +36,8 @@ class CoverageVisitor : public PileupVisitor {
   
     // PileupVisitor interface implementation
     public:
-//         void Visit(const int& refId, const int& position, const vector<BamAlignment>& alignments) {
+       // prints coverage results ( tab-delimited )
         void Visit(const PileupPosition& pileupData) {
-            // -----------------------------------------
-            // print coverage results ( tab-delimited )
-            // <refName> <0-based pos> <number of alleles>
-//             *m_out << m_references[refId].RefName << "\t" << position << "\t" << alignments.size() << endl;
             *m_out << m_references[pileupData.RefId].RefName << "\t" 
                    << pileupData.Position << "\t" 
                    << pileupData.PileupAlignments.size() << endl;

diff --git a/src/utils/bamtools_pileup_engine.h b/src/utils/bamtools_pileup_engine.h
index 403c4b4cbb0edb3ff15db68c151e36ff886c737e..bbfd102b523179f52d6e6e2cca33dc9b230ac482 100644 (file)
--- a/src/utils/bamtools_pileup_engine.h
+++ b/src/utils/bamtools_pileup_engine.h
@@ -91,4 +91,4 @@ class PileupEngine {
 
 } // namespace BamTools
 
-#endif // BAMTOOLS_PILEUP_ENGINE_H
\ No newline at end of file
+#endif // BAMTOOLS_PILEUP_ENGINE_H