// BamMultiReader_p.cpp (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
-// Last modified: 14 January 2013 (DB)
+// Last modified: 24 July 2013 (DB)
// ---------------------------------------------------------------------------
// Functionality for simultaneously reading multiple BAM files
// *************************************************************************
m_mergeOrder = BamMultiReader::MergeByCoordinate;
// if BAM files are sorted by read name
- if ( header.SortOrder == Constants::SAM_HD_SORTORDER_QUERYNAME )
+ else if ( header.SortOrder == Constants::SAM_HD_SORTORDER_QUERYNAME )
m_mergeOrder = BamMultiReader::MergeByName;
// otherwise, sorting is either "unknown" or marked as "unsorted"