X-Git-Url: https://git.donarmstrong.com/?p=bamtools.git;a=blobdiff_plain;f=src%2Fapi%2Finternal%2Fbam%2FBamMultiReader_p.cpp;h=310d8371241f4650fcb95c66e1977bcc2625ef25;hp=08d445d0986aedfa06d4b5939383df0fdebc739f;hb=9cfa70bfe9cdf1b6adc06beb88246b45fdd6250a;hpb=153d8f44a0ae6aebd0323289d961e5c00ea2b212

diff --git a/src/api/internal/bam/BamMultiReader_p.cpp b/src/api/internal/bam/BamMultiReader_p.cpp
index 08d445d..310d837 100644
--- a/src/api/internal/bam/BamMultiReader_p.cpp
+++ b/src/api/internal/bam/BamMultiReader_p.cpp
@@ -2,7 +2,7 @@
 // BamMultiReader_p.cpp (c) 2010 Derek Barnett, Erik Garrison
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 14 January 2013 (DB)
+// Last modified: 24 July 2013 (DB)
 // ---------------------------------------------------------------------------
 // Functionality for simultaneously reading multiple BAM files
 // *************************************************************************
@@ -184,7 +184,7 @@ IMultiMerger* BamMultiReaderPrivate::CreateAlignmentCache(void) {
             m_mergeOrder = BamMultiReader::MergeByCoordinate;
 
         // if BAM files are sorted by read name
-        if ( header.SortOrder == Constants::SAM_HD_SORTORDER_QUERYNAME )
+        else if ( header.SortOrder == Constants::SAM_HD_SORTORDER_QUERYNAME )
             m_mergeOrder = BamMultiReader::MergeByName;
 
         // otherwise, sorting is either "unknown" or marked as "unsorted"