src/test/api/BamAlignment/BamAlignmentFlagTest.h

   1 #ifndef BAMALIGNMENT_FLAGTEST_H
   2 #define BAMALIGNMENT_FLAGTEST_H
   3
   4 #include "api/BamAlignment.h"
   5 #include <gtest/gtest.h>
   6
   7 class BamAlignment_FlagTest : public ::testing::Test {
   8     protected:
   9         BamTools::BamAlignment al;
  10 };
  11
  12 TEST_F(BamAlignment_FlagTest, IsDuplicate) {
  13     al.SetIsDuplicate(true);
  14     EXPECT_TRUE(al.IsDuplicate());
  15     al.SetIsDuplicate(false);
  16     EXPECT_FALSE(al.IsDuplicate());
  17 }
  18
  19 TEST_F(BamAlignment_FlagTest, IsFailedQC) {
  20     al.SetIsFailedQC(true);
  21     EXPECT_TRUE(al.IsFailedQC());
  22     al.SetIsFailedQC(false);
  23     EXPECT_FALSE(al.IsFailedQC());
  24 }
  25
  26 TEST_F(BamAlignment_FlagTest, IsFirstMate) {
  27     al.SetIsFirstMate(true);
  28     EXPECT_TRUE(al.IsFirstMate());
  29     al.SetIsFirstMate(false);
  30     EXPECT_FALSE(al.IsFirstMate());
  31 }
  32
  33 TEST_F(BamAlignment_FlagTest, IsMapped) {
  34     al.SetIsMapped(true);
  35     EXPECT_TRUE(al.IsMapped());
  36     al.SetIsMapped(false);
  37     EXPECT_FALSE(al.IsMapped());
  38 }
  39
  40 TEST_F(BamAlignment_FlagTest, IsMateMapped) {
  41     al.SetIsMateMapped(true);
  42     EXPECT_TRUE(al.IsMateMapped());
  43     al.SetIsMateMapped(false);
  44     EXPECT_FALSE(al.IsMateMapped());
  45 }
  46
  47 TEST_F(BamAlignment_FlagTest, IsMateReverseStrand) {
  48     al.SetIsMateReverseStrand(true);
  49     EXPECT_TRUE(al.IsMateReverseStrand());
  50     al.SetIsMateReverseStrand(false);
  51     EXPECT_FALSE(al.IsMateReverseStrand());
  52 }
  53
  54 TEST_F(BamAlignment_FlagTest, IsPaired) {
  55     al.SetIsPaired(true);
  56     EXPECT_TRUE(al.IsPaired());
  57     al.SetIsPaired(false);
  58     EXPECT_FALSE(al.IsPaired());
  59 }
  60
  61 TEST_F(BamAlignment_FlagTest, IsPrimaryAlignment) {
  62     al.SetIsPrimaryAlignment(true);
  63     EXPECT_TRUE(al.IsPrimaryAlignment());
  64     al.SetIsPrimaryAlignment(false);
  65     EXPECT_FALSE(al.IsPrimaryAlignment());
  66 }
  67
  68 TEST_F(BamAlignment_FlagTest, IsProperPair) {
  69     al.SetIsProperPair(true);
  70     EXPECT_TRUE(al.IsProperPair());
  71     al.SetIsProperPair(false);
  72     EXPECT_FALSE(al.IsProperPair());
  73 }
  74
  75 TEST_F(BamAlignment_FlagTest, IsReverseStrand) {
  76     al.SetIsReverseStrand(true);
  77     EXPECT_TRUE(al.IsReverseStrand());
  78     al.SetIsReverseStrand(false);
  79     EXPECT_FALSE(al.IsReverseStrand());
  80 }
  81
  82 TEST_F(BamAlignment_FlagTest, IsSecondMate) {
  83     al.SetIsSecondMate(true);
  84     EXPECT_TRUE(al.IsSecondMate());
  85     al.SetIsSecondMate(false);
  86     EXPECT_FALSE(al.IsSecondMate());
  87 }
  88
  89 #endif // BAMALIGNMENT_FLAGTEST_H