src/api/CMakeLists.txt

   1 # ==========================
   2 # BamTools CMakeLists.txt
   3 # (c) 2010 Derek Barnett
   4 #
   5 # src/api/
   6 # ==========================
   7
   8 # list include paths
   9 include_directories( ${BamTools_SOURCE_DIR}/src )
  10
  11 # add compiler definitions
  12 add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
  13 add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
  14
  15 # list of all BamTools API source (.cpp) files
  16 set( BamToolsAPISources
  17         BamAlignment.cpp
  18         BamMultiReader.cpp
  19         BamReader.cpp
  20         BamWriter.cpp
  21         SamHeader.cpp
  22         SamProgram.cpp
  23         SamProgramChain.cpp
  24         SamReadGroup.cpp
  25         SamReadGroupDictionary.cpp
  26         SamSequence.cpp
  27         SamSequenceDictionary.cpp
  28         internal/BamDeviceFactory_p.cpp
  29         internal/BamException_p.cpp
  30         internal/BamFile_p.cpp
  31         internal/BamFtp_p.cpp
  32         internal/BamHeader_p.cpp
  33         internal/BamHttp_p.cpp
  34         internal/BamIndexFactory_p.cpp
  35         internal/BamMultiReader_p.cpp
  36         internal/BamPipe_p.cpp
  37         internal/BamRandomAccessController_p.cpp
  38         internal/BamReader_p.cpp
  39         internal/BamStandardIndex_p.cpp
  40         internal/BamToolsIndex_p.cpp
  41         internal/BamWriter_p.cpp
  42         internal/BgzfStream_p.cpp
  43         internal/ILocalIODevice_p.cpp
  44         internal/IRemoteIODevice_p.cpp
  45         internal/SamFormatParser_p.cpp
  46         internal/SamFormatPrinter_p.cpp
  47         internal/SamHeaderValidator_p.cpp
  48 )
  49
  50 # create main BamTools API shared library
  51 add_library( BamTools SHARED ${BamToolsAPISources} )
  52 set_target_properties( BamTools PROPERTIES SOVERSION "2.0.0" )
  53 set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
  54
  55 # create main BamTools API static library
  56 add_library( BamTools-static STATIC ${BamToolsAPISources} )
  57 set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
  58 set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
  59
  60 # link libraries with zlib automatically
  61 target_link_libraries( BamTools z )
  62 target_link_libraries( BamTools-static z )
  63
  64 # set library install destinations
  65 install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
  66 install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
  67
  68 # export API headers
  69 include(../ExportHeader.cmake)
  70 set(ApiIncludeDir "api")
  71 ExportHeader(APIHeaders api_global.h             ${ApiIncludeDir})
  72 ExportHeader(APIHeaders BamAlgorithms.h           ${ApiIncludeDir})
  73 ExportHeader(APIHeaders BamAlignment.h           ${ApiIncludeDir})
  74 ExportHeader(APIHeaders BamAux.h                 ${ApiIncludeDir})
  75 ExportHeader(APIHeaders BamConstants.h           ${ApiIncludeDir})
  76 ExportHeader(APIHeaders BamIndex.h               ${ApiIncludeDir})
  77 ExportHeader(APIHeaders BamMultiReader.h         ${ApiIncludeDir})
  78 ExportHeader(APIHeaders BamReader.h              ${ApiIncludeDir})
  79 ExportHeader(APIHeaders BamWriter.h              ${ApiIncludeDir})
  80 ExportHeader(APIHeaders IBamIODevice.h           ${ApiIncludeDir})
  81 ExportHeader(APIHeaders SamConstants.h           ${ApiIncludeDir})
  82 ExportHeader(APIHeaders SamHeader.h              ${ApiIncludeDir})
  83 ExportHeader(APIHeaders SamProgram.h             ${ApiIncludeDir})
  84 ExportHeader(APIHeaders SamProgramChain.h        ${ApiIncludeDir})
  85 ExportHeader(APIHeaders SamReadGroup.h           ${ApiIncludeDir})
  86 ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
  87 ExportHeader(APIHeaders SamSequence.h            ${ApiIncludeDir})
  88 ExportHeader(APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir})
  89
  90 set(AlgorithmsIncludeDir "api/algorithms")
  91 ExportHeader(AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir})