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2012-12-27	paradis	new code for reading FASTA files	commit \| commitdiff \| tree
2012-12-19	paradis	a few changes....	commit \| commitdiff \| tree
2012-11-28	paradis	adding the new function 'where'	commit \| commitdiff \| tree
2012-11-22	paradis	fix in drop.tip() and new option in pic()	commit \| commitdiff \| tree
2012-10-22	paradis	final corrections for ape 3.0-6	commit \| commitdiff \| tree
2012-10-12	paradis	some changes for ape 3.0-6	commit \| commitdiff \| tree
2012-10-02	paradis	some updates for ape 3.0-6	commit \| commitdiff \| tree
2012-09-07	paradis	updated reorder.phylo.Rd	commit \| commitdiff \| tree
2012-09-03	paradis	provisional version of the new reorder.phylo()	commit \| commitdiff \| tree
2012-08-20	paradis	changes in reorder(, "cladewise")	commit \| commitdiff \| tree
2012-08-16	paradis	new dist.nodes() with C code	commit \| commitdiff \| tree
2012-06-25	paradis	better error-catching with ace()	commit \| commitdiff \| tree
2012-06-25	paradis	small moification on man page of as.phylo	commit \| commitdiff \| tree
2012-06-22	paradis	some small changes	commit \| commitdiff \| tree
2012-05-03	paradis	fix in read.dna and change in write.dna	commit \| commitdiff \| tree
2012-05-01	paradis	various fixes in C files	commit \| commitdiff \| tree
2012-04-20	paradis	fix in birthdeath()	commit \| commitdiff \| tree
2012-04-05	paradis	final warp for ape 3.0-2	commit \| commitdiff \| tree
2012-04-02	paradis	bunch of fixes for ape 3.0-2	commit \| commitdiff \| tree
2012-03-31	paradis	various bug fixes	commit \| commitdiff \| tree
2012-03-24	paradis	various bug fixes	commit \| commitdiff \| tree
2012-03-05	paradis	a few fixes	commit \| commitdiff \| tree
2012-02-28	paradis	new alex()	commit \| commitdiff \| tree
2012-02-17	paradis	various bug fixes since the release of ape 3.0	commit \| commitdiff \| tree
2012-02-14	paradis	a fix in cophyloplot()	commit \| commitdiff \| tree
2012-02-10	paradis	final commit for ape 3.0	commit \| commitdiff \| tree
2012-02-08	paradis	new files for ape 3.0	commit \| commitdiff \| tree
2012-01-13	paradis	final wrap for ape 3.0	commit \| commitdiff \| tree
2011-12-17	paradis	new option 'rotate.tree' in plot.phylo()	commit \| commitdiff \| tree
2011-11-22	paradis	fixes in mantel.test() and extract.clade()	commit \| commitdiff \| tree
2011-11-10	paradis	a few changes...	commit \| commitdiff \| tree
2011-10-20	paradis	big update with files from Andrei	commit \| commitdiff \| tree
2011-09-26	paradis	new LTT plot functions + updated reference in yule...	commit \| commitdiff \| tree
2011-08-09	paradis	final fixes for ape 2.7-3	commit \| commitdiff \| tree
2011-08-05	paradis	bug fix in root()	commit \| commitdiff \| tree
2011-08-04	paradis	fix in c.multiPhylo()	commit \| commitdiff \| tree
2011-07-18	paradis	new method = "REML" in ace() with continuous traits	commit \| commitdiff \| tree
2011-07-15	paradis	new compute.brtime() + minor change in dist.topo.R	commit \| commitdiff \| tree
2011-07-07	paradis	bug fix in chronopl()	commit \| commitdiff \| tree
2011-06-27	paradis	some updates (including new CADM.global.Rd file)	commit \| commitdiff \| tree
2011-06-25	paradis	cleaning of C files and update on simulation of OU...	commit \| commitdiff \| tree
2011-06-21	paradis	various bug fixes	commit \| commitdiff \| tree
2011-06-16	paradis	various updates for ape 2.7-2 (fixed)	commit \| commitdiff \| tree
2011-06-03	paradis	various fixes and small news	commit \| commitdiff \| tree
2011-05-19	paradis	fixing drop.tip and bionj	commit \| commitdiff \| tree
2011-04-18	paradis	change file name ChangeLog to NEWS	commit \| commitdiff \| tree
2011-04-18	paradis	small update in rTrait.R (coercing parameters as double)	commit \| commitdiff \| tree
2011-03-29	paradis	new option 'draw' in plot.phylo()	commit \| commitdiff \| tree
2011-03-26	paradis	final update for ape 2.7-1	commit \| commitdiff \| tree
2011-03-23	paradis	new trex() + kronoviz() and bug fixing in identify...	commit \| commitdiff \| tree
2011-03-21	paradis	some big fixes for ape 2.7-1	commit \| commitdiff \| tree
2011-03-17	paradis	final packing for ape 2.7	commit \| commitdiff \| tree
2011-03-16	paradis	a bunch of new stuff (see ChangeLog)	commit \| commitdiff \| tree
2011-03-16	paradis	new image.DNAbin()	commit \| commitdiff \| tree
2011-03-02	paradis	fixes in bind.tree()	commit \| commitdiff \| tree
2011-03-01	paradis	bug fixing in read.nexus() + Others....	commit \| commitdiff \| tree
2011-02-17	paradis	bug fixes in plot.phylo	commit \| commitdiff \| tree
2011-02-11	paradis	a few bug fixes especially in plot.phylo()	commit \| commitdiff \| tree
2011-02-01	paradis	bug fix in read.dna + change the default of tol in...	commit \| commitdiff \| tree
2010-12-24	paradis	some bug fixes and '...' in rTrait*()	commit \| commitdiff \| tree
2010-12-14	paradis	several fixes	commit \| commitdiff \| tree
2010-12-07	paradis	bug fix in write.tree()	commit \| commitdiff \| tree
2010-11-30	paradis	fix a bug in as.hclust.phylo + a few typos in man pages	commit \| commitdiff \| tree
2010-11-24	paradis	various bug fixes	commit \| commitdiff \| tree
2010-11-18	paradis	bug fix in mcmc.popsize()	commit \| commitdiff \| tree
2010-11-15	paradis	new pic.ortho() and varCompPhylip() + fix in dist.nodes()	commit \| commitdiff \| tree
2010-11-08	paradis	bug fixed in write.tree	commit \| commitdiff \| tree
2010-11-04	paradis	a bunch of modifications and fixes	commit \| commitdiff \| tree
2010-11-01	paradis	final version for ape 2.6-1	commit \| commitdiff \| tree
2010-10-20	paradis	new speciesTree()	commit \| commitdiff \| tree
2010-10-19	paradis	a few changes and one bug fix	commit \| commitdiff \| tree
2010-10-07	paradis	correcting a bug in write.tree + error in MPR examples	commit \| commitdiff \| tree
2010-10-07	paradis	a few changes....	commit \| commitdiff \| tree
2010-09-27	paradis	adding bd.time	commit \| commitdiff \| tree
2010-09-16	paradis	many changes!	commit \| commitdiff \| tree
2010-07-21	paradis	improvements to compar.gee + bug fix in extract.clade	commit \| commitdiff \| tree
2010-07-19	paradis	BOTHlabels(... hozir = TRUE)	commit \| commitdiff \| tree
2010-07-13	paradis	new as.list.DNAbin	commit \| commitdiff \| tree
2010-06-14	paradis	small changes in PGLS.R	commit \| commitdiff \| tree
2010-05-27	paradis	new mixedFontLabel() + bug fix in rTraitCont.c	commit \| commitdiff \| tree
2010-05-25	paradis	new operators for "multiPhylo" + fixed small bug in...	commit \| commitdiff \| tree
2010-05-17	paradis	various changes to DNAbin functions + new labels.DNAbin()	commit \| commitdiff \| tree
2010-05-17	paradis	removing NPRS + change bind.tree.Rd to avoid crash...	commit \| commitdiff \| tree
2010-05-06	paradis	2nd try!!	commit \| commitdiff \| tree
2010-04-24	paradis	new faster nj.c	commit \| commitdiff \| tree
2010-04-07	paradis	removing evolve.phylo + bug fix in as.phylo.hclust	commit \| commitdiff \| tree
2010-04-02	paradis	various corrections	commit \| commitdiff \| tree
2010-03-19	paradis	fixing various bugs + news in cophyloplot	commit \| commitdiff \| tree
2010-03-16	paradis	fixes in compar.ou and plot.phylo + new bind.tree	commit \| commitdiff \| tree
2010-03-13	paradis	adding stree.Rd	commit \| commitdiff \| tree
2010-03-13	paradis	few corrections and fixes	commit \| commitdiff \| tree
2010-02-03	paradis	fix rTraitDisc	commit \| commitdiff \| tree
2010-02-01	paradis	final packaging for ape 2.5!	commit \| commitdiff \| tree
2010-01-26	paradis	updating ChangeLog file	commit \| commitdiff \| tree
2010-01-25	paradis	data for lmorigin	commit \| commitdiff \| tree
2010-01-25	paradis	adding lmorigin + final correction to dist.topo	commit \| commitdiff \| tree
2010-01-23	paradis	new dist.topo (to be finished) and modified multi2di	commit \| commitdiff \| tree
2010-01-22	paradis	new code from Pierre Legendre	commit \| commitdiff \| tree
2010-01-15	paradis	add delta.plot + clarify doc in write.tree.Rd	commit \| commitdiff \| tree
2010-01-12	paradis	new files for trait simulations	commit \| commitdiff \| tree
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