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final commit for ape 3.0-8
[ape.git] / R /
2010-01-22 paradisnew code from Pierre Legendre tree | commitdiff
2010-01-15 paradisadd delta.plot + clarify doc in write.tree.Rd tree | commitdiff
2010-01-12 paradisnew files for trait simulations tree | commitdiff
2010-01-04 paradisvarious changes... tree | commitdiff
2009-12-16 paradissmall changed in add.scale.bar tree | commitdiff
2009-11-21 paradislast changes for ape 2.4-1 tree | commitdiff
2009-11-10 paradisremoving plot.phylo.coor (definitely) tree | commitdiff
2009-11-10 paradisagain........... tree | commitdiff
2009-11-03 paradischanged rtree and rcoal tree | commitdiff
2009-10-28 paradissome bug fixes tree | commitdiff
2009-10-05 paradisfinal changes for ape 2.4 including removing mlphylo! tree | commitdiff
2009-10-02 paradisvarious changes and fixes tree | commitdiff
2009-09-30 paradisfinal plot.phylo and change to BOTHlabels() from Janet... tree | commitdiff
2009-09-24 paradisfinally the new plot.phylo... tree | commitdiff
2009-09-18 paradisremoving files that have moved to pegas tree | commitdiff
2009-09-18 paradismoved functions from ape to pegas -> ape 2.4 tree | commitdiff
2009-09-16 paradisbug fix in seg.sites + new option in base.freq tree | commitdiff
2009-09-09 paradisa collection of bug fixes tree | commitdiff
2009-07-27 paradisfixing write.nexus() tree | commitdiff
2009-07-27 paradisfixing zoom() tree | commitdiff
2009-07-23 paradisfixing add.scale.bar() tree | commitdiff
2009-07-20 paradisfaster nj()!!! tree | commitdiff
2009-07-14 paradisfixing nj() with many 0 distances tree | commitdiff
2009-07-07 paradisseveral bug fixes while in JKT tree | commitdiff
2009-06-23 paradisfixes for ape 2.3-1 tree | commitdiff
2009-06-23 paradisfix a bug in drop.tip + add new option 'rooted' tree | commitdiff
2009-06-19 paradisnew is.monophyletic() + various changes/fixes tree | commitdiff
2009-06-12 paradisremoved klastorin() tree | commitdiff
2009-06-10 paradisimproved ace() tree | commitdiff
2009-06-09 paradisfixed null model in yule.cov + various things tree | commitdiff
2009-05-19 paradisnew c.DNAbin() tree | commitdiff
2009-05-14 paradisfaster rcoal... at last! tree | commitdiff
2009-05-12 paradismany changes....... tree | commitdiff
2009-04-27 paradisfixed a small bug in read.tree tree | commitdiff
2009-04-01 paradisfix on dist.gene + a few man pages corrections tree | commitdiff
2009-03-30 paradisvarious changes for ape 2.3 tree | commitdiff
2009-03-27 paradisadded edge.lty to plot.phylo tree | commitdiff
2009-03-23 paradisadding contribs by Daniel Lawson tree | commitdiff
2009-03-23 paradischange nlm to nlminb in ace() + new makeNodeLabel ... tree | commitdiff
2009-03-10 paradisvarious fixes + del xenarthra tree | commitdiff
2009-03-04 paradiscorrecting bug in drop.tip tree | commitdiff
2009-02-20 paradisadded the contribution of PL on CDAM tree | commitdiff
2009-02-20 paradisnew yule.time + several corrections in man pages tree | commitdiff
2009-01-20 paradisfix to avoid uncessary warning in ace(method = "GLS") tree | commitdiff
2009-01-19 paradisbug fix in read.nexus + new ?ape man page tree | commitdiff
2009-01-12 paradisupdates for ape 2.2-3 tree | commitdiff
2009-01-08 paradisvarious updates + adding SPR+TBR in fastme.bal() tree | commitdiff
2008-12-20 paradisbug fixed in ltt.plot.R tree | commitdiff
2008-11-24 paradisfix bug in read.nexus() tree | commitdiff
2008-11-04 paradisfixing bug in chronopl(, CV = TRUE) tree | commitdiff
2008-10-09 paradisimproved cbind.DNAbin for ape 2.2-2 tree | commitdiff
2008-10-08 paradisupdated phymltest() for PhyML 3.0 + changed rbind.DNAbin() tree | commitdiff
2008-10-02 paradisbug corrected in del.gaps + small change in man page... tree | commitdiff
2008-09-18 paradisfix a few bugs + correct some the man page of sh.test() tree | commitdiff
2008-07-18 paradiscorrecting 2 bugs in new dist.gene() tree | commitdiff
2008-07-18 paradisfixed prop.part() tree | commitdiff
2008-07-18 paradisnew dist.gene() + corrected mlphylo() tree | commitdiff
2008-07-11 paradisfixed sh.test() for ape 2.2-1 tree | commitdiff
2008-07-11 paradisfinal fix in read.nexus() for ape 2.2-1 tree | commitdiff
2008-07-09 paradisbug fix in read.nexus() tree | commitdiff
2008-07-08 paradisvarious corrections tree | commitdiff
2008-07-03 paradisnew makeLabel() + modifs in read.dna() & write.dna() tree | commitdiff
2008-06-28 paradischanged check.labels = TRUE in dist.topo() and consensus() tree | commitdiff
2008-06-24 paradisbug fix in read.nexus() tree | commitdiff
2008-06-19 paradisbug fix in collapsed.singles() tree | commitdiff
2008-06-18 paradisbugs fixing in mlphylo() tree | commitdiff
2008-06-12 paradisbug fix in root() tree | commitdiff
2008-06-09 paradisimproved unique.multiPhylo() tree | commitdiff
2008-06-08 paradisadding del.gaps() tree | commitdiff
2008-05-08 paradisfinal wrap of ape 2.2 tree | commitdiff
2008-05-06 paradiscosmetic modif on rtree() + last (?) changes to Damien... tree | commitdiff
2008-04-24 paradisfix bug in seg.sites + improved Damien's man pages tree | commitdiff
2008-04-18 paradisadded corPagel + gave version # 2.2 tree | commitdiff
2008-04-17 paradisfix on drop.tip() tree | commitdiff
2008-04-17 paradisnew files by Damien + a few bug fixes tree | commitdiff
2008-04-10 paradisremoved the print(node.labels) tree | commitdiff
2008-03-31 paradisimproved chronopl tree | commitdiff
2008-03-17 paradisfixed bugs in multi2di and di2multi + code and doc... tree | commitdiff
2008-03-11 paradiscode clean-up in DNA.R tree | commitdiff
2008-03-03 paradisupdate for ape 2.1-2 tree | commitdiff
2008-02-27 paradisfixing a few bugs... tree | commitdiff
2008-02-13 paradisimproved root() tree | commitdiff
2008-02-08 paradisadded "DUP=FALSE, NAOK=TRUE" to .C in DNA.R tree | commitdiff
2008-02-07 paradisvarious updates...[21~ tree | commitdiff
2008-01-21 paradisfix a bug in nuc.div() tree | commitdiff
2008-01-14 paradisstabler and faster C code for ME and BIONJ tree | commitdiff
2008-01-08 paradisnew function rmtree tree | commitdiff
2008-01-04 paradiscurrent 2.1 release tree | commitdiff
Local fork of ape (analysis of ecology)