git.donarmstrong.com Git - ape.git/history

]> git.donarmstrong.com Git - ape.git/history - R/DNA.R

2012-12-27	paradis	new code for reading FASTA files	blob \| commitdiff \| raw
2012-12-19	paradis	a few changes....	blob \| commitdiff \| raw \| diff to current
2012-11-28	paradis	adding the new function 'where'	blob \| commitdiff \| raw \| diff to current
2012-10-02	paradis	some updates for ape 3.0-6	blob \| commitdiff \| raw \| diff to current
2012-06-22	paradis	some small changes	blob \| commitdiff \| raw \| diff to current
2012-05-03	paradis	fix in read.dna and change in write.dna	blob \| commitdiff \| raw \| diff to current
2012-02-17	paradis	various bug fixes since the release of ape 3.0	blob \| commitdiff \| raw \| diff to current
2012-01-13	paradis	final wrap for ape 3.0	blob \| commitdiff \| raw \| diff to current
2011-08-04	paradis	fix in c.multiPhylo()	blob \| commitdiff \| raw \| diff to current
2011-03-21	paradis	some big fixes for ape 2.7-1	blob \| commitdiff \| raw \| diff to current
2011-03-16	paradis	a bunch of new stuff (see ChangeLog)	blob \| commitdiff \| raw \| diff to current
2011-03-16	paradis	new image.DNAbin()	blob \| commitdiff \| raw \| diff to current
2011-03-01	paradis	bug fixing in read.nexus() + Others....	blob \| commitdiff \| raw \| diff to current
2010-10-19	paradis	a few changes and one bug fix	blob \| commitdiff \| raw \| diff to current
2010-09-16	paradis	many changes!	blob \| commitdiff \| raw \| diff to current
2010-07-19	paradis	BOTHlabels(... hozir = TRUE)	blob \| commitdiff \| raw \| diff to current
2010-07-13	paradis	new as.list.DNAbin	blob \| commitdiff \| raw \| diff to current
2010-05-17	paradis	various changes to DNAbin functions + new labels.DNAbin()	blob \| commitdiff \| raw \| diff to current
2010-03-19	paradis	fixing various bugs + news in cophyloplot	blob \| commitdiff \| raw \| diff to current
2009-10-02	paradis	various changes and fixes	blob \| commitdiff \| raw \| diff to current
2009-09-18	paradis	moved functions from ape to pegas -> ape 2.4	blob \| commitdiff \| raw \| diff to current
2009-09-16	paradis	bug fix in seg.sites + new option in base.freq	blob \| commitdiff \| raw \| diff to current
2009-09-09	paradis	a collection of bug fixes	blob \| commitdiff \| raw \| diff to current
2009-06-09	paradis	fixed null model in yule.cov + various things	blob \| commitdiff \| raw \| diff to current
2009-05-19	paradis	new c.DNAbin()	blob \| commitdiff \| raw \| diff to current
2009-05-12	paradis	many changes.......	blob \| commitdiff \| raw \| diff to current
2009-01-08	paradis	various updates + adding SPR+TBR in fastme.bal()	blob \| commitdiff \| raw \| diff to current
2008-10-09	paradis	improved cbind.DNAbin for ape 2.2-2	blob \| commitdiff \| raw \| diff to current
2008-10-08	paradis	updated phymltest() for PhyML 3.0 + changed rbind.DNAbin()	blob \| commitdiff \| raw \| diff to current
2008-10-02	paradis	bug corrected in del.gaps + small change in man page...	blob \| commitdiff \| raw \| diff to current
2008-09-18	paradis	fix a few bugs + correct some the man page of sh.test()	blob \| commitdiff \| raw \| diff to current
2008-06-08	paradis	adding del.gaps()	blob \| commitdiff \| raw \| diff to current
2008-04-24	paradis	fix bug in seg.sites + improved Damien's man pages	blob \| commitdiff \| raw \| diff to current
2008-03-11	paradis	code clean-up in DNA.R	blob \| commitdiff \| raw \| diff to current
2008-02-08	paradis	added "DUP=FALSE, NAOK=TRUE" to .C in DNA.R	blob \| commitdiff \| raw \| diff to current
2008-02-07	paradis	various updates...[21~	blob \| commitdiff \| raw \| diff to current
2008-01-21	paradis	fix a bug in nuc.div()	blob \| commitdiff \| raw \| diff to current
2008-01-04	paradis	current 2.1 release	blob \| commitdiff \| raw \| diff to current

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