+ CHANGES IN APE VERSION 2.2-3
+
+
+BUG FIXES
+
+ o chronopl() did not work with CV = TRUE.
+
+
+
CHANGES IN APE VERSION 2.2-2
Package: ape
-Version: 2.2-2
-Date: 2008-10-08
+Version: 2.2-3
+Date: 2008-11-04
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
-## chronopl.R (2008-03-26)
+## chronopl.R (2008-11-04)
## Molecular Dating With Penalized Likelihood
if (length(node)) {
chr <- chronopl(tr, lambda, age.min, age.max, node,
S, tol, FALSE, eval.max, iter.max, ...)
+ tmp <-
+ if (Nnode(chr) == Nnode(ophy)) BT else BT[-(ophy$edge[j, 1] - n)]
D2[i] <- sum((tmp - branching.times(chr))^2 / tmp)
} else D2[i] <- 0
}