a few changes....

[ape.git] / NEWS

diff --git a/NEWS b/NEWS
index 9d57433878a743da5cbd7fd9481b4bc14a80bfc0..f6acbff8297c3c3756acc8ec24a2db1115399c7d 100644 (file)
--- a/NEWS
+++ b/NEWS
@@ -6,13 +6,28 @@ NEW FEATURES
     o The new function 'where' searches patterns in DNA sequences.
 
     o pic() gains an option 'rescaled.tree = FALSE' to return the tree
-      with its branch lengths rescaled for the PICs calculation.
+      with its branch lengths rescaled for the PIC calculation.
+
+    o clustal(), muscle(), and tcoffee() gain an option
+      'original.ordering = TRUE' to ease the comparisons of
+      alignments.
+
+    o plot.phylo() has a new option, open.angle, used when plotting
+      circular trees.
 
 
 BUG FIXES
 
     o drop.tip() shuffled node labels on some trees.
 
+    o axisPhylo() now works correctly with circular trees, and gives a
+      sensible error message when type = "r" or "u".
+
+
+OTHER CHANGES
+
+    o .compressTipLabel() is 10 times faster thanks to Joseph Brown.
+
 
 
                CHANGES IN APE VERSION 3.0-6