X-Git-Url: https://git.donarmstrong.com/?p=ape.git;a=blobdiff_plain;f=NEWS;h=f6acbff8297c3c3756acc8ec24a2db1115399c7d;hp=9d57433878a743da5cbd7fd9481b4bc14a80bfc0;hb=a2fc961dffe9f9b7994ed880e68c03b2334dc341;hpb=dff741171e7afe3f9aaa2d9cb19c2f91995e8623 diff --git a/NEWS b/NEWS index 9d57433..f6acbff 100644 --- a/NEWS +++ b/NEWS @@ -6,13 +6,28 @@ NEW FEATURES o The new function 'where' searches patterns in DNA sequences. o pic() gains an option 'rescaled.tree = FALSE' to return the tree - with its branch lengths rescaled for the PICs calculation. + with its branch lengths rescaled for the PIC calculation. + + o clustal(), muscle(), and tcoffee() gain an option + 'original.ordering = TRUE' to ease the comparisons of + alignments. + + o plot.phylo() has a new option, open.angle, used when plotting + circular trees. BUG FIXES o drop.tip() shuffled node labels on some trees. + o axisPhylo() now works correctly with circular trees, and gives a + sensible error message when type = "r" or "u". + + +OTHER CHANGES + + o .compressTipLabel() is 10 times faster thanks to Joseph Brown. + CHANGES IN APE VERSION 3.0-6