various updates + adding SPR+TBR in fastme.bal()

[ape.git] / NAMESPACE

diff --git a/NAMESPACE b/NAMESPACE
new file mode 100644 (file)
index 0000000..18ed656
--- /dev/null
+++ b/NAMESPACE
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+useDynLib(ape)
+
+export(as.DNAbin, as.phylo, base.freq, dist.dna, dist.nodes, drop.tip, ltt.plot, nj, rcoal, rtree, rmtree, read.dna, read.nexus, read.tree, vcv.phylo, write.dna, write.nexus, write.tree)
+
+import(gee, nlme)
+importFrom(lattice, xyplot, panel.lines, panel.points)
+
+S3method(print, phylo)
+S3method(plot, phylo)
+S3method(as.hclust, phylo)
+S3method(reorder, phylo)
+S3method(print, multiPhylo)
+S3method(plot, multiPhylo)
+S3method("[", multiPhylo)
+S3method("[[", multiPhylo)
+S3method("$", multiPhylo)
+S3method(unique, multiPhylo)
+S3method(print, DNAbin)
+S3method(cbind, DNAbin)
+S3method(rbind, DNAbin)
+S3method("[", DNAbin)
+S3method(summary, DNAbin)
+S3method(as.character, DNAbin)