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new code for reading FASTA files
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1 \name{triangMtd}
2 \alias{triangMtd}
3 \alias{triangMtds}
4 \title{Tree Reconstruction Based on the Triangles Method}
5 \usage{
6 triangMtd(X)
7 triangMtds(X)
8 }
9 \arguments{
10   \item{X}{a distance matrix}.
11 }
12 \description{
13   Fast distance-based construction method. Should only be used when
14   distance measures are fairly reliable.
15 }
16 \value{
17   an object of class \code{"phylo"}.
18 }
19 \references{
20   \url{http://archive.numdam.org/ARCHIVE/RO/RO_2001__35_2/RO_2001__35_2_283_0/RO_2001__35_2_283_0.pdf}
21 }
22 \author{Andrei Popescu \email{niteloserpopescu@gmail.com}}
23 \seealso{
24   \code{\link{nj}}, \code{\link{bionj}}, \code{\link{fastme}},
25   \code{\link{njs}}, \code{\link{mvrs}}, \code{\link{SDM}}
26 }
27 \examples{
28 data(woodmouse)
29 tr <- triangMtd(dist.dna(woodmouse))
30 plot(tr)
31 }
32 \keyword{models}