data/cynipids.txt

   1 #NEXUS
   2 [LWRh data from Rokas et al. 2002. Molecular Phylogenetics and Evolution 22:206-219]
   3 BEGIN DATA;
   4   DIMENSIONS NTAX=8 NCHAR=159;
   5   FORMAT MISSING=? GAP=- DATATYPE=PROTEIN INTERLEAVE=YES;
   6   MATRIX
   7     Barbotinia_oraniensis            LGPFICEIYAMLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTISGAI
   8     Synergus_gallaepomiformis        LGPFICEMYGMFGSLFGCGSIWTMCMIAFDRYNVIVKGLVGKPLTISGAI
   9     Periclistus_brandtii             LGPFMCEIYAMLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLSISGAI
  10     Panteliella_bicolor              LGPFLCEMYGMFGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTITGAI
  11     Plagiotrochus_quercusilicis      HGPFMCEMYAMFGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTISGAI
  12     Andricus_curvator                LGPFMCEIYAMLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTISGAI
  13     Andricus_kollari                 LGPFMCEIYAMLGSLFGCVSIWTMCMIAFDRYNVIVKGLAGKPLTISGAI
  14     Diplolepis_rosae                 -GPFLCEIYALLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTITGAI
  15
  16     Barbotinia_oraniensis            LRIVFLWVWAVVWTIAPMIGWNRYVPEGNMTACGTDYLTKDWFSRSYILV
  17     Synergus_gallaepomiformis        LRIAFLWIWAVIWTIAPMIGWNRYVPEGNMTACGTDYLSKDWFSRSYIIV
  18     Periclistus_brandtii             LRIVGLWVWAVIWTIAPMIGWNRYVPEGNLTACGTDYLSKDWLSRSYILV
  19     Panteliella_bicolor              LRIVGLWVWAVIWTIAPMIGWNRYVPEGNMTACGTDYLNKDWFSRSYILI
  20     Plagiotrochus_quercusilicis      LRIVGLWVWAVIWTIAPMLGWNRYVPEGNMTACGTDYLTKDWFSRSYILV
  21     Andricus_curvator                LRIVGLWVWAVIWTIAPMLGWNRYVPEGNMTACGTDYLSKDWFSRSYILV
  22     Andricus_kollari                 LRIVGLWVWAIIWTIAPMLGWNRYVPEGNMTACGTDYLSKDWFSRSYIIV
  23     Diplolepis_rosae                 IRIIGLWVWAIIWTIAPMFGWNRYVPEGNMTACGTDYLSKDWFSRSYILV
  24
  25     Barbotinia_oraniensis            YSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQN
  26     Synergus_gallaepomiformis        YSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQN
  27     Periclistus_brandtii             YSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQN
  28     Panteliella_bicolor              YSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQN
  29     Plagiotrochus_quercusilicis      YSVFVYFMPLFLIIYSYYFIIAAVTAHEKAMREQAKKMNVASLRSSDNQN
  30     Andricus_curvator                YSIFVYFMPLFLIIYSYYFIIAAVTAHEKAMREQAKKMNVASLRSSDNQN
  31     Andricus_kollari                 YSIFVYFMPLFLIIYSYYFIIAAVTAHEKAMREQAKKMNVASLRSSDNQN
  32     Diplolepis_rosae                 YSIFVYYMPLFLIIYSYYFIISAVSAHEKAMREQAKKMNVASLRSSDNAN
  33
  34     Barbotinia_oraniensis            TSAEHKLAK
  35     Synergus_gallaepomiformis        TSAEHKLAK
  36     Periclistus_brandtii             TSAEHKLAK
  37     Panteliella_bicolor              TSAEHKLAK
  38     Plagiotrochus_quercusilicis      TSAEHKLAK
  39     Andricus_curvator                TSAEHKLAK
  40     Andricus_kollari                 TSAEHKLAK
  41     Diplolepis_rosae                 TSAEHKLAK
  42   ;
  43 END;
  44