git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	100	00README	blob \| history \| raw
lrwxrwxrwx	33	add_ident -> ../code_perl/Maasha/bin/add_ident	blob \| history \| raw
lrwxrwxrwx	33	align_seq -> ../code_perl/Maasha/bin/align_seq	blob \| history \| raw
lrwxrwxrwx	35	analyze_bed -> ../code_perl/Maasha/bin/analyze_bed	blob \| history \| raw
lrwxrwxrwx	35	analyze_seq -> ../code_perl/Maasha/bin/analyze_seq	blob \| history \| raw
lrwxrwxrwx	36	analyze_tags -> ../code_perl/Maasha/bin/analyze_tags	blob \| history \| raw
lrwxrwxrwx	36	analyze_vals -> ../code_perl/Maasha/bin/analyze_vals	blob \| history \| raw
lrwxrwxrwx	44	assemble_tag_contigs -> ../code_perl/Maasha/bin/assemble_tag_contigs	blob \| history \| raw
lrwxrwxrwx	33	blast_seq -> ../code_perl/Maasha/bin/blast_seq	blob \| history \| raw
lrwxrwxrwx	32	blat_seq -> ../code_perl/Maasha/bin/blat_seq	blob \| history \| raw
lrwxrwxrwx	39	calc_bit_scores -> ../code_perl/Maasha/bin/calc_bit_scores	blob \| history \| raw
lrwxrwxrwx	38	calc_fixedstep -> ../code_perl/Maasha/bin/calc_fixedstep	blob \| history \| raw
lrwxrwxrwx	38	complement_seq -> ../code_perl/Maasha/bin/complement_seq	blob \| history \| raw
lrwxrwxrwx	38	complexity_seq -> ../code_perl/Maasha/bin/complexity_seq	blob \| history \| raw
lrwxrwxrwx	31	compute -> ../code_perl/Maasha/bin/compute	blob \| history \| raw
lrwxrwxrwx	37	count_records -> ../code_perl/Maasha/bin/count_records	blob \| history \| raw
lrwxrwxrwx	34	count_vals -> ../code_perl/Maasha/bin/count_vals	blob \| history \| raw
lrwxrwxrwx	39	create_blast_db -> ../code_perl/Maasha/bin/create_blast_db	blob \| history \| raw
lrwxrwxrwx	43	create_vmatch_index -> ../code_perl/Maasha/bin/create_vmatch_index	blob \| history \| raw
lrwxrwxrwx	44	create_weight_matrix -> ../code_perl/Maasha/bin/create_weight_matrix	blob \| history \| raw
lrwxrwxrwx	35	extract_seq -> ../code_perl/Maasha/bin/extract_seq	blob \| history \| raw
lrwxrwxrwx	32	flip_tab -> ../code_perl/Maasha/bin/flip_tab	blob \| history \| raw
lrwxrwxrwx	32	fold_seq -> ../code_perl/Maasha/bin/fold_seq	blob \| history \| raw
lrwxrwxrwx	37	format_genome -> ../code_perl/Maasha/bin/format_genome	blob \| history \| raw
lrwxrwxrwx	40	get_genome_align -> ../code_perl/Maasha/bin/get_genome_align	blob \| history \| raw
lrwxrwxrwx	44	get_genome_phastcons -> ../code_perl/Maasha/bin/get_genome_phastcons	blob \| history \| raw
lrwxrwxrwx	38	get_genome_seq -> ../code_perl/Maasha/bin/get_genome_seq	blob \| history \| raw
lrwxrwxrwx	28	grab -> ../code_perl/Maasha/bin/grab	blob \| history \| raw
lrwxrwxrwx	36	head_records -> ../code_perl/Maasha/bin/head_records	blob \| history \| raw
lrwxrwxrwx	36	invert_align -> ../code_perl/Maasha/bin/invert_align	blob \| history \| raw
lrwxrwxrwx	34	length_seq -> ../code_perl/Maasha/bin/length_seq	blob \| history \| raw
lrwxrwxrwx	35	length_vals -> ../code_perl/Maasha/bin/length_vals	blob \| history \| raw
lrwxrwxrwx	38	list_biopieces -> ../code_perl/Maasha/bin/list_biopieces	blob \| history \| raw
lrwxrwxrwx	36	list_genomes -> ../code_perl/Maasha/bin/list_genomes	blob \| history \| raw
lrwxrwxrwx	34	lowercase_seq -> ../code_python/Cjung/lowercase_seq	blob \| history \| raw
lrwxrwxrwx	33	match_seq -> ../code_perl/Maasha/bin/match_seq	blob \| history \| raw
lrwxrwxrwx	32	max_vals -> ../code_perl/Maasha/bin/max_vals	blob \| history \| raw
lrwxrwxrwx	33	mean_vals -> ../code_perl/Maasha/bin/mean_vals	blob \| history \| raw
lrwxrwxrwx	35	median_vals -> ../code_perl/Maasha/bin/median_vals	blob \| history \| raw
lrwxrwxrwx	37	merge_records -> ../code_perl/Maasha/bin/merge_records	blob \| history \| raw
lrwxrwxrwx	34	merge_vals -> ../code_perl/Maasha/bin/merge_vals	blob \| history \| raw
lrwxrwxrwx	32	min_vals -> ../code_perl/Maasha/bin/min_vals	blob \| history \| raw
lrwxrwxrwx	34	oligo_freq -> ../code_perl/Maasha/bin/oligo_freq	blob \| history \| raw
lrwxrwxrwx	35	patscan_seq -> ../code_perl/Maasha/bin/patscan_seq	blob \| history \| raw
lrwxrwxrwx	36	plot_chrdist -> ../code_perl/Maasha/bin/plot_chrdist	blob \| history \| raw
lrwxrwxrwx	38	plot_histogram -> ../code_perl/Maasha/bin/plot_histogram	blob \| history \| raw
lrwxrwxrwx	38	plot_karyogram -> ../code_perl/Maasha/bin/plot_karyogram	blob \| history \| raw
lrwxrwxrwx	36	plot_lendist -> ../code_perl/Maasha/bin/plot_lendist	blob \| history \| raw
lrwxrwxrwx	36	plot_matches -> ../code_perl/Maasha/bin/plot_matches	blob \| history \| raw
lrwxrwxrwx	47	plot_phastcons_profiles -> ../code_perl/Maasha/bin/plot_phastcons_profiles	blob \| history \| raw
lrwxrwxrwx	36	plot_seqlogo -> ../code_perl/Maasha/bin/plot_seqlogo	blob \| history \| raw
lrwxrwxrwx	35	print_usage -> ../code_perl/Maasha/bin/print_usage	blob \| history \| raw
lrwxrwxrwx	38	random_records -> ../code_perl/Maasha/bin/random_records	blob \| history \| raw
lrwxrwxrwx	33	read_2bit -> ../code_perl/Maasha/bin/read_2bit	blob \| history \| raw
lrwxrwxrwx	32	read_bed -> ../code_perl/Maasha/bin/read_bed	blob \| history \| raw
lrwxrwxrwx	38	read_blast_tab -> ../code_perl/Maasha/bin/read_blast_tab	blob \| history \| raw
lrwxrwxrwx	33	read_embl -> ../code_perl/Maasha/bin/read_embl	blob \| history \| raw
lrwxrwxrwx	34	read_fasta -> ../code_perl/Maasha/bin/read_fasta	blob \| history \| raw
lrwxrwxrwx	38	read_fixedstep -> ../code_perl/Maasha/bin/read_fixedstep	blob \| history \| raw
lrwxrwxrwx	32	read_gff -> ../code_perl/Maasha/bin/read_gff	blob \| history \| raw
lrwxrwxrwx	34	read_mysql -> ../code_perl/Maasha/bin/read_mysql	blob \| history \| raw
lrwxrwxrwx	38	read_phastcons -> ../code_perl/Maasha/bin/read_phastcons	blob \| history \| raw
lrwxrwxrwx	32	read_psl -> ../code_perl/Maasha/bin/read_psl	blob \| history \| raw
lrwxrwxrwx	33	read_soft -> ../code_perl/Maasha/bin/read_soft	blob \| history \| raw
lrwxrwxrwx	35	read_solexa -> ../code_perl/Maasha/bin/read_solexa	blob \| history \| raw
lrwxrwxrwx	34	read_solid -> ../code_perl/Maasha/bin/read_solid	blob \| history \| raw
lrwxrwxrwx	38	read_stockholm -> ../code_perl/Maasha/bin/read_stockholm	blob \| history \| raw
lrwxrwxrwx	32	read_tab -> ../code_perl/Maasha/bin/read_tab	blob \| history \| raw
lrwxrwxrwx	40	read_ucsc_config -> ../code_perl/Maasha/bin/read_ucsc_config	blob \| history \| raw
lrwxrwxrwx	38	remove_adaptor -> ../code_perl/Maasha/bin/remove_adaptor	blob \| history \| raw
lrwxrwxrwx	37	remove_indels -> ../code_perl/Maasha/bin/remove_indels	blob \| history \| raw
lrwxrwxrwx	35	remove_keys -> ../code_perl/Maasha/bin/remove_keys	blob \| history \| raw
lrwxrwxrwx	43	remove_mysql_tables -> ../code_perl/Maasha/bin/remove_mysql_tables	blob \| history \| raw
lrwxrwxrwx	42	remove_ucsc_tracks -> ../code_perl/Maasha/bin/remove_ucsc_tracks	blob \| history \| raw
lrwxrwxrwx	35	rename_keys -> ../code_perl/Maasha/bin/rename_keys	blob \| history \| raw
lrwxrwxrwx	35	reverse_seq -> ../code_perl/Maasha/bin/reverse_seq	blob \| history \| raw
lrwxrwxrwx	35	shuffle_seq -> ../code_perl/Maasha/bin/shuffle_seq	blob \| history \| raw
lrwxrwxrwx	32	soap_seq -> ../code_perl/Maasha/bin/soap_seq	blob \| history \| raw
lrwxrwxrwx	36	sort_records -> ../code_perl/Maasha/bin/sort_records	blob \| history \| raw
lrwxrwxrwx	33	split_bed -> ../code_perl/Maasha/bin/split_bed	blob \| history \| raw
lrwxrwxrwx	33	split_seq -> ../code_perl/Maasha/bin/split_seq	blob \| history \| raw
lrwxrwxrwx	32	sum_vals -> ../code_perl/Maasha/bin/sum_vals	blob \| history \| raw
lrwxrwxrwx	32	tile_seq -> ../code_perl/Maasha/bin/tile_seq	blob \| history \| raw
lrwxrwxrwx	37	translate_seq -> ../code_perl/Maasha/bin/translate_seq	blob \| history \| raw
lrwxrwxrwx	41	transliterate_seq -> ../code_perl/Maasha/bin/transliterate_seq	blob \| history \| raw
lrwxrwxrwx	42	transliterate_vals -> ../code_perl/Maasha/bin/transliterate_vals	blob \| history \| raw
lrwxrwxrwx	33	uniq_vals -> ../code_perl/Maasha/bin/uniq_vals	blob \| history \| raw
lrwxrwxrwx	38	upload_to_ucsc -> ../code_perl/Maasha/bin/upload_to_ucsc	blob \| history \| raw
lrwxrwxrwx	37	uppercase_seq -> ../code_perl/Maasha/bin/uppercase_seq	blob \| history \| raw
lrwxrwxrwx	34	vmatch_seq -> ../code_perl/Maasha/bin/vmatch_seq	blob \| history \| raw
lrwxrwxrwx	34	write_2bit -> ../code_perl/Maasha/bin/write_2bit	blob \| history \| raw
lrwxrwxrwx	35	write_align -> ../code_perl/Maasha/bin/write_align	blob \| history \| raw
lrwxrwxrwx	33	write_bed -> ../code_perl/Maasha/bin/write_bed	blob \| history \| raw
lrwxrwxrwx	35	write_blast -> ../code_perl/Maasha/bin/write_blast	blob \| history \| raw
lrwxrwxrwx	35	write_fasta -> ../code_perl/Maasha/bin/write_fasta	blob \| history \| raw
lrwxrwxrwx	39	write_fixedstep -> ../code_perl/Maasha/bin/write_fixedstep	blob \| history \| raw
lrwxrwxrwx	33	write_psl -> ../code_perl/Maasha/bin/write_psl	blob \| history \| raw
lrwxrwxrwx	35	write_solid -> ../code_perl/Maasha/bin/write_solid	blob \| history \| raw
lrwxrwxrwx	33	write_tab -> ../code_perl/Maasha/bin/write_tab	blob \| history \| raw
lrwxrwxrwx	41	write_ucsc_config -> ../code_perl/Maasha/bin/write_ucsc_config	blob \| history \| raw