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ape.git
2011-02-01
paradis
bug fix in read.dna + change the default of tol in...
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2010-12-24
paradis
some bug fixes and '...' in rTrait*()
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2010-12-14
paradis
several fixes
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2010-12-07
paradis
bug fix in write.tree()
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2010-11-30
paradis
fix a bug in as.hclust.phylo + a few typos in man pages
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2010-11-24
paradis
various bug fixes
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2010-11-18
paradis
bug fix in mcmc.popsize()
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2010-11-15
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new pic.ortho() and varCompPhylip() + fix in dist.nodes()
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2010-11-08
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bug fixed in write.tree
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2010-11-04
paradis
a bunch of modifications and fixes
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2010-11-01
paradis
final version for ape 2.6-1
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2010-10-20
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new speciesTree()
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2010-10-19
paradis
a few changes and one bug fix
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2010-10-07
paradis
correcting a bug in write.tree + error in MPR examples
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2010-10-07
paradis
a few changes....
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2010-09-27
paradis
adding bd.time
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2010-09-16
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many changes!
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2010-07-21
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improvements to compar.gee + bug fix in extract.clade
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2010-07-19
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BOTHlabels(... hozir = TRUE)
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2010-07-13
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new as.list.DNAbin
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2010-06-14
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small changes in PGLS.R
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2010-05-27
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new mixedFontLabel() + bug fix in rTraitCont.c
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2010-05-25
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new operators for "multiPhylo" + fixed small bug in...
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2010-05-17
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various changes to DNAbin functions + new labels.DNAbin()
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2010-05-17
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removing NPRS + change bind.tree.Rd to avoid crash...
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2010-05-06
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2nd try!!
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2010-04-24
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new faster nj.c
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2010-04-07
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removing evolve.phylo + bug fix in as.phylo.hclust
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2010-04-02
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various corrections
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2010-03-19
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fixing various bugs + news in cophyloplot
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2010-03-16
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fixes in compar.ou and plot.phylo + new bind.tree
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2010-03-13
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adding stree.Rd
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2010-03-13
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few corrections and fixes
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2010-02-03
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fix rTraitDisc
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2010-02-01
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final packaging for ape 2.5!
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2010-01-26
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updating ChangeLog file
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2010-01-25
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data for lmorigin
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2010-01-25
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adding lmorigin + final correction to dist.topo
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2010-01-23
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new dist.topo (to be finished) and modified multi2di
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2010-01-22
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new code from Pierre Legendre
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2010-01-15
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add delta.plot + clarify doc in write.tree.Rd
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2010-01-12
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new files for trait simulations
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2010-01-04
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various changes...
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2009-12-16
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small changed in add.scale.bar
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2009-11-21
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last changes for ape 2.4-1
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2009-11-10
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removing plot.phylo.coor (definitely)
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2009-11-10
paradis
again...........
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2009-11-03
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changed rtree and rcoal
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2009-10-28
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some bug fixes
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2009-10-05
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final changes for ape 2.4 including removing mlphylo!
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2009-10-02
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various changes and fixes
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2009-09-30
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final plot.phylo and change to BOTHlabels() from Janet...
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2009-09-24
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finally the new plot.phylo...
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2009-09-18
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removing files that have moved to pegas
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2009-09-18
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moved functions from ape to pegas -> ape 2.4
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2009-09-16
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bug fix in seg.sites + new option in base.freq
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2009-09-14
paradis
typo fixing...
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2009-09-09
paradis
a collection of bug fixes
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2009-07-27
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fixing write.nexus()
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2009-07-27
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fixing zoom()
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2009-07-23
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fixing add.scale.bar()
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2009-07-20
paradis
faster nj()!!!
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2009-07-14
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fixing nj() with many 0 distances
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2009-07-07
paradis
several bug fixes while in JKT
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2009-06-23
paradis
fixes for ape 2.3-1
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2009-06-23
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fix a bug in drop.tip + add new option 'rooted'
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2009-06-19
paradis
new is.monophyletic() + various changes/fixes
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2009-06-12
paradis
removed klastorin()
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2009-06-10
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improved ace()
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2009-06-09
paradis
fixed null model in yule.cov + various things
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2009-05-19
paradis
new c.DNAbin()
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2009-05-14
paradis
faster rcoal... at last!
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2009-05-12
paradis
many changes.......
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2009-04-27
paradis
fixed a small bug in read.tree
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2009-04-01
paradis
fix on dist.gene + a few man pages corrections
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2009-03-30
paradis
various changes for ape 2.3
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2009-03-27
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added edge.lty to plot.phylo
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2009-03-23
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adding contribs by Daniel Lawson
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2009-03-23
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change nlm to nlminb in ace() + new makeNodeLabel ...
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2009-03-10
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various fixes + del xenarthra
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2009-03-04
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correcting bug in drop.tip
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2009-02-20
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added the contribution of PL on CDAM
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2009-02-20
paradis
new yule.time + several corrections in man pages
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2009-01-20
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fix to avoid uncessary warning in ace(method = "GLS")
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2009-01-19
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bug fix in read.nexus + new ?ape man page
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2009-01-13
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correcting errors in Rd files
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2009-01-12
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updates for ape 2.2-3
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2009-01-08
paradis
various updates + adding SPR+TBR in fastme.bal()
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2008-12-20
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bug fixed in ltt.plot.R
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2008-11-24
paradis
fix bug in read.nexus()
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2008-11-04
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fixing bug in chronopl(, CV = TRUE)
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2008-10-09
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improved cbind.DNAbin for ape 2.2-2
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2008-10-08
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updated phymltest() for PhyML 3.0 + changed rbind.DNAbin()
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2008-10-02
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bug corrected in del.gaps + small change in man page...
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2008-09-25
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correcting ref in mcmc.popsize.Rd (from Gramlitz)
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2008-09-18
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fix a few bugs + correct some the man page of sh.test()
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2008-07-28
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changed some data sets (made lighter) + clarified man...
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2008-07-21
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adding tree_build.c
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2008-07-18
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correcting 2 bugs in new dist.gene()
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2008-07-18
paradis
fixed prop.part()
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