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ape.git
2011-02-01 paradisbug fix in read.dna + change the default of tol in... commit | commitdiff | tree | snapshot
2010-12-24 paradissome bug fixes and '...' in rTrait*() commit | commitdiff | tree | snapshot
2010-12-14 paradisseveral fixes commit | commitdiff | tree | snapshot
2010-12-07 paradisbug fix in write.tree() commit | commitdiff | tree | snapshot
2010-11-30 paradisfix a bug in as.hclust.phylo + a few typos in man pages commit | commitdiff | tree | snapshot
2010-11-24 paradisvarious bug fixes commit | commitdiff | tree | snapshot
2010-11-18 paradisbug fix in mcmc.popsize() commit | commitdiff | tree | snapshot
2010-11-15 paradisnew pic.ortho() and varCompPhylip() + fix in dist.nodes() commit | commitdiff | tree | snapshot
2010-11-08 paradisbug fixed in write.tree commit | commitdiff | tree | snapshot
2010-11-04 paradisa bunch of modifications and fixes commit | commitdiff | tree | snapshot
2010-11-01 paradisfinal version for ape 2.6-1 commit | commitdiff | tree | snapshot
2010-10-20 paradisnew speciesTree() commit | commitdiff | tree | snapshot
2010-10-19 paradisa few changes and one bug fix commit | commitdiff | tree | snapshot
2010-10-07 paradiscorrecting a bug in write.tree + error in MPR examples commit | commitdiff | tree | snapshot
2010-10-07 paradisa few changes.... commit | commitdiff | tree | snapshot
2010-09-27 paradisadding bd.time commit | commitdiff | tree | snapshot
2010-09-16 paradismany changes! commit | commitdiff | tree | snapshot
2010-07-21 paradisimprovements to compar.gee + bug fix in extract.clade commit | commitdiff | tree | snapshot
2010-07-19 paradisBOTHlabels(... hozir = TRUE) commit | commitdiff | tree | snapshot
2010-07-13 paradisnew as.list.DNAbin commit | commitdiff | tree | snapshot
2010-06-14 paradissmall changes in PGLS.R commit | commitdiff | tree | snapshot
2010-05-27 paradisnew mixedFontLabel() + bug fix in rTraitCont.c commit | commitdiff | tree | snapshot
2010-05-25 paradisnew operators for "multiPhylo" + fixed small bug in... commit | commitdiff | tree | snapshot
2010-05-17 paradisvarious changes to DNAbin functions + new labels.DNAbin() commit | commitdiff | tree | snapshot
2010-05-17 paradisremoving NPRS + change bind.tree.Rd to avoid crash... commit | commitdiff | tree | snapshot
2010-05-06 paradis2nd try!! commit | commitdiff | tree | snapshot
2010-04-24 paradisnew faster nj.c commit | commitdiff | tree | snapshot
2010-04-07 paradisremoving evolve.phylo + bug fix in as.phylo.hclust commit | commitdiff | tree | snapshot
2010-04-02 paradisvarious corrections commit | commitdiff | tree | snapshot
2010-03-19 paradisfixing various bugs + news in cophyloplot commit | commitdiff | tree | snapshot
2010-03-16 paradisfixes in compar.ou and plot.phylo + new bind.tree commit | commitdiff | tree | snapshot
2010-03-13 paradisadding stree.Rd commit | commitdiff | tree | snapshot
2010-03-13 paradisfew corrections and fixes commit | commitdiff | tree | snapshot
2010-02-03 paradisfix rTraitDisc commit | commitdiff | tree | snapshot
2010-02-01 paradisfinal packaging for ape 2.5! commit | commitdiff | tree | snapshot
2010-01-26 paradisupdating ChangeLog file commit | commitdiff | tree | snapshot
2010-01-25 paradisdata for lmorigin commit | commitdiff | tree | snapshot
2010-01-25 paradisadding lmorigin + final correction to dist.topo commit | commitdiff | tree | snapshot
2010-01-23 paradisnew dist.topo (to be finished) and modified multi2di commit | commitdiff | tree | snapshot
2010-01-22 paradisnew code from Pierre Legendre commit | commitdiff | tree | snapshot
2010-01-15 paradisadd delta.plot + clarify doc in write.tree.Rd commit | commitdiff | tree | snapshot
2010-01-12 paradisnew files for trait simulations commit | commitdiff | tree | snapshot
2010-01-04 paradisvarious changes... commit | commitdiff | tree | snapshot
2009-12-16 paradissmall changed in add.scale.bar commit | commitdiff | tree | snapshot
2009-11-21 paradislast changes for ape 2.4-1 commit | commitdiff | tree | snapshot
2009-11-10 paradisremoving plot.phylo.coor (definitely) commit | commitdiff | tree | snapshot
2009-11-10 paradisagain........... commit | commitdiff | tree | snapshot
2009-11-03 paradischanged rtree and rcoal commit | commitdiff | tree | snapshot
2009-10-28 paradissome bug fixes commit | commitdiff | tree | snapshot
2009-10-05 paradisfinal changes for ape 2.4 including removing mlphylo! commit | commitdiff | tree | snapshot
2009-10-02 paradisvarious changes and fixes commit | commitdiff | tree | snapshot
2009-09-30 paradisfinal plot.phylo and change to BOTHlabels() from Janet... commit | commitdiff | tree | snapshot
2009-09-24 paradisfinally the new plot.phylo... commit | commitdiff | tree | snapshot
2009-09-18 paradisremoving files that have moved to pegas commit | commitdiff | tree | snapshot
2009-09-18 paradismoved functions from ape to pegas -> ape 2.4 commit | commitdiff | tree | snapshot
2009-09-16 paradisbug fix in seg.sites + new option in base.freq commit | commitdiff | tree | snapshot
2009-09-14 paradistypo fixing... commit | commitdiff | tree | snapshot
2009-09-09 paradisa collection of bug fixes commit | commitdiff | tree | snapshot
2009-07-27 paradisfixing write.nexus() commit | commitdiff | tree | snapshot
2009-07-27 paradisfixing zoom() commit | commitdiff | tree | snapshot
2009-07-23 paradisfixing add.scale.bar() commit | commitdiff | tree | snapshot
2009-07-20 paradisfaster nj()!!! commit | commitdiff | tree | snapshot
2009-07-14 paradisfixing nj() with many 0 distances commit | commitdiff | tree | snapshot
2009-07-07 paradisseveral bug fixes while in JKT commit | commitdiff | tree | snapshot
2009-06-23 paradisfixes for ape 2.3-1 commit | commitdiff | tree | snapshot
2009-06-23 paradisfix a bug in drop.tip + add new option 'rooted' commit | commitdiff | tree | snapshot
2009-06-19 paradisnew is.monophyletic() + various changes/fixes commit | commitdiff | tree | snapshot
2009-06-12 paradisremoved klastorin() commit | commitdiff | tree | snapshot
2009-06-10 paradisimproved ace() commit | commitdiff | tree | snapshot
2009-06-09 paradisfixed null model in yule.cov + various things commit | commitdiff | tree | snapshot
2009-05-19 paradisnew c.DNAbin() commit | commitdiff | tree | snapshot
2009-05-14 paradisfaster rcoal... at last! commit | commitdiff | tree | snapshot
2009-05-12 paradismany changes....... commit | commitdiff | tree | snapshot
2009-04-27 paradisfixed a small bug in read.tree commit | commitdiff | tree | snapshot
2009-04-01 paradisfix on dist.gene + a few man pages corrections commit | commitdiff | tree | snapshot
2009-03-30 paradisvarious changes for ape 2.3 commit | commitdiff | tree | snapshot
2009-03-27 paradisadded edge.lty to plot.phylo commit | commitdiff | tree | snapshot
2009-03-23 paradisadding contribs by Daniel Lawson commit | commitdiff | tree | snapshot
2009-03-23 paradischange nlm to nlminb in ace() + new makeNodeLabel ... commit | commitdiff | tree | snapshot
2009-03-10 paradisvarious fixes + del xenarthra commit | commitdiff | tree | snapshot
2009-03-04 paradiscorrecting bug in drop.tip commit | commitdiff | tree | snapshot
2009-02-20 paradisadded the contribution of PL on CDAM commit | commitdiff | tree | snapshot
2009-02-20 paradisnew yule.time + several corrections in man pages commit | commitdiff | tree | snapshot
2009-01-20 paradisfix to avoid uncessary warning in ace(method = "GLS") commit | commitdiff | tree | snapshot
2009-01-19 paradisbug fix in read.nexus + new ?ape man page commit | commitdiff | tree | snapshot
2009-01-13 paradiscorrecting errors in Rd files commit | commitdiff | tree | snapshot
2009-01-12 paradisupdates for ape 2.2-3 commit | commitdiff | tree | snapshot
2009-01-08 paradisvarious updates + adding SPR+TBR in fastme.bal() commit | commitdiff | tree | snapshot
2008-12-20 paradisbug fixed in ltt.plot.R commit | commitdiff | tree | snapshot
2008-11-24 paradisfix bug in read.nexus() commit | commitdiff | tree | snapshot
2008-11-04 paradisfixing bug in chronopl(, CV = TRUE) commit | commitdiff | tree | snapshot
2008-10-09 paradisimproved cbind.DNAbin for ape 2.2-2 commit | commitdiff | tree | snapshot
2008-10-08 paradisupdated phymltest() for PhyML 3.0 + changed rbind.DNAbin() commit | commitdiff | tree | snapshot
2008-10-02 paradisbug corrected in del.gaps + small change in man page... commit | commitdiff | tree | snapshot
2008-09-25 paradiscorrecting ref in mcmc.popsize.Rd (from Gramlitz) commit | commitdiff | tree | snapshot
2008-09-18 paradisfix a few bugs + correct some the man page of sh.test() commit | commitdiff | tree | snapshot
2008-07-28 paradischanged some data sets (made lighter) + clarified man... commit | commitdiff | tree | snapshot
2008-07-21 paradisadding tree_build.c commit | commitdiff | tree | snapshot
2008-07-18 paradiscorrecting 2 bugs in new dist.gene() commit | commitdiff | tree | snapshot
2008-07-18 paradisfixed prop.part() commit | commitdiff | tree | snapshot
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