2009-05-18 |
westcott | added shen calculator |
commit | commitdiff | tree | snapshot |
2009-05-18 |
westcott | added help for alignment code and thomas' calcs to... |
commit | commitdiff | tree | snapshot |
2009-05-18 |
westcott | added boneh, efron, and solow calculators |
commit | commitdiff | tree | snapshot |
2009-05-18 |
westcott | added alignment code |
commit | commitdiff | tree | snapshot |
2009-05-15 |
westcott | fixed if defined in dist.seqs command |
commit | commitdiff | tree | snapshot |
2009-05-15 |
westcott | fixed memory leak in collect.shared() |
commit | commitdiff | tree | snapshot |
2009-05-15 |
westcott | speed up rarefaction.shared |
commit | commitdiff | tree | snapshot |
2009-05-15 |
westcott | fixed bug in heatmap |
commit | commitdiff | tree | snapshot |
2009-05-14 |
westcott | fixed memory leak in rarefact |
commit | commitdiff | tree | snapshot |
2009-05-14 |
westcott | fixed bug in venn command |
commit | commitdiff | tree | snapshot |
2009-05-13 |
westcott | changed name of distance command to dist.seqs |
commit | commitdiff | tree | snapshot |
2009-05-13 |
westcott | changed all shared commands so that they read the share... |
commit | commitdiff | tree | snapshot |
2009-05-13 |
westcott | fixed bug with getting sharedrabunds for venn, heatmap... |
commit | commitdiff | tree | snapshot |
2009-05-12 |
westcott | added distance command and filterseqs |
commit | commitdiff | tree | snapshot |
2009-05-08 |
westcott | altered venn command to make use of sharedchao for... |
commit | commitdiff | tree | snapshot |
2009-05-08 |
ryabin | filterseqscommand added |
commit | commitdiff | tree | snapshot |
2009-05-07 |
westcott | fixed concensus command and modified tree class so... |
commit | commitdiff | tree | snapshot |
2009-05-04 |
ryabin | *** empty log message *** |
commit | commitdiff | tree | snapshot |
2009-05-04 |
westcott | fixed xp user bug with rarefact commands and cluster... |
commit | commitdiff | tree | snapshot |
2009-05-04 |
westcott | added concensus command and updated calcs |
commit | commitdiff | tree | snapshot |
2009-05-04 |
westcott | added concensus command and updated calcs |
commit | commitdiff | tree | snapshot |
2009-05-04 |
westcott | added concensus command |
commit | commitdiff | tree | snapshot |
2009-04-24 |
pschloss | This is mothur v 1.2.0 - the April ~24, 2009 release |
commit | commitdiff | tree | snapshot |
2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
commit | commitdiff | tree | snapshot |
2009-04-22 |
pschloss | modified some calculators and other stuff - pds |
commit | commitdiff | tree | snapshot |
2009-04-22 |
westcott | changed heatmap and venn command to use vector of share... |
commit | commitdiff | tree | snapshot |
2009-04-21 |
westcott | broke apart read matrix file |
commit | commitdiff | tree | snapshot |
2009-04-21 |
westcott | fixed bug with get.oturep and fixed problem with errorc... |
commit | commitdiff | tree | snapshot |
2009-04-21 |
westcott | fixed bug with parsimony(groups=all) and unifrac.unweig... |
commit | commitdiff | tree | snapshot |
2009-04-21 |
westcott | fixed bug in venn command which caused error when user... |
commit | commitdiff | tree | snapshot |
2009-04-20 |
pschloss | pds fixes of heatmap and some other minor stuff |
commit | commitdiff | tree | snapshot |
2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
commit | commitdiff | tree | snapshot |
2009-04-14 |
westcott | removed "shared" from some of the calculator names... |
commit | commitdiff | tree | snapshot |
2009-04-14 |
pschloss | *** empty log message *** |
commit | commitdiff | tree | snapshot |
2009-04-14 |
westcott | added log10 and log2 scalers for heatmap |
commit | commitdiff | tree | snapshot |
2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
commit | commitdiff | tree | snapshot |
2009-04-08 |
westcott | fixed bug in read.tree updates help and validparameters... |
commit | commitdiff | tree | snapshot |
2009-04-06 |
westcott | added get.oturep command |
commit | commitdiff | tree | snapshot |
2009-04-06 |
westcott | fixed memory leak in parsimony calculator and added... |
commit | commitdiff | tree | snapshot |
2009-04-03 |
westcott | venn command with up to 4 groups using sharedsobs,... |
commit | commitdiff | tree | snapshot |
2009-04-02 |
westcott | venn command with up to 4 groups |
commit | commitdiff | tree | snapshot |
2009-03-31 |
westcott | started venn command |
commit | commitdiff | tree | snapshot |
2009-03-30 |
ryabin | Fixed validParameter() method so line parameter can... |
commit | commitdiff | tree | snapshot |
2009-03-30 |
westcott | made sorting optional but sort by default, in case... |
commit | commitdiff | tree | snapshot |
2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top... |
commit | commitdiff | tree | snapshot |
2009-03-27 |
westcott | fixed reference issue |
commit | commitdiff | tree | snapshot |
2009-03-27 |
westcott | added heatmap command |
commit | commitdiff | tree | snapshot |
2009-03-27 |
westcott | added heatmap command |
commit | commitdiff | tree | snapshot |
2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
commit | commitdiff | tree | snapshot |
2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
commit | commitdiff | tree | snapshot |
2009-03-26 |
westcott | heatmap |
commit | commitdiff | tree | snapshot |
2009-03-25 |
westcott | started heatmap command |
commit | commitdiff | tree | snapshot |
2009-03-24 |
westcott | added sharedbraycurtis, sharedmorisirahorn, sharedkulcz... |
commit | commitdiff | tree | snapshot |
2009-03-23 |
westcott | added sharedochiai and sharedanderberg calculators |
commit | commitdiff | tree | snapshot |
2009-03-23 |
westcott | fixed libshuff signif. values |
commit | commitdiff | tree | snapshot |
2009-03-23 |
westcott | put back no command and worked on libshuff |
commit | commitdiff | tree | snapshot |
2009-03-20 |
westcott | removed no command because it is never called now that... |
commit | commitdiff | tree | snapshot |
2009-03-20 |
westcott | documentation |
commit | commitdiff | tree | snapshot |
2009-03-19 |
westcott | fixed memory leak globaldata container structures,... |
commit | commitdiff | tree | snapshot |
2009-03-19 |
westcott | fixed memory leak of groupmap in reads |
commit | commitdiff | tree | snapshot |
2009-03-19 |
westcott | updated errorchecking so it checks if the parameter... |
commit | commitdiff | tree | snapshot |
2009-03-19 |
westcott | libshuff and updated help to include libshuff and modif... |
commit | commitdiff | tree | snapshot |
2009-03-18 |
westcott | working on libshuff |
commit | commitdiff | tree | snapshot |
2009-03-16 |
westcott | added nseqs and sharednseqs calculators, removed excess... |
commit | commitdiff | tree | snapshot |
2009-03-10 |
westcott | working on libshuff |
commit | commitdiff | tree | snapshot |
2009-03-09 |
pschloss | changed the ending of the unique fasta sequence file... |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | added abs() to weighted and unweighted to account for... |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | fixed bug in read.tree |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | fixed bug in summary.shared for groups |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | fixed bug with line and label parameters and added... |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | added ability for user to select which groups to analyz... |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | fixed outputs in unifrac to look the same |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | fixed memory issue with cluster command |
commit | commitdiff | tree | snapshot |
2009-03-09 |
westcott | fixed valid parameters to include shared parameter... |
commit | commitdiff | tree | snapshot |
2009-03-07 |
pschloss | mucked around some with the output in the unifrac.weigh... |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | got rid of rd_parsimony ext. |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | fixed bug wit unifrac files |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | added full matrix files |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | fixed bug in random option of parsimony() |
commit | commitdiff | tree | snapshot |
2009-03-06 |
pschloss | fixed parsimony bug |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | changed format of output in unifrac and parsimony files |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | fixed bug in read tree |
commit | commitdiff | tree | snapshot |
2009-03-06 |
westcott | fixed bug in read tree |
commit | commitdiff | tree | snapshot |
2009-03-05 |
westcott | working on readtree |
commit | commitdiff | tree | snapshot |
2009-03-04 |
westcott | unifrac.weighted |
commit | commitdiff | tree | snapshot |
2009-03-03 |
westcott | parsimony output changed |
commit | commitdiff | tree | snapshot |
2009-03-03 |
westcott | unifrac.unweighted command changes |
commit | commitdiff | tree | snapshot |
2009-03-02 |
westcott | worked on unifrac.unweighted() |
commit | commitdiff | tree | snapshot |
2009-03-02 |
westcott | fixed bug in unweighted |
commit | commitdiff | tree | snapshot |
2009-02-27 |
westcott | fixed parsimony with groups and worked on unifrac.unwei... |
commit | commitdiff | tree | snapshot |
2009-02-26 |
westcott | parsimony with groups |
commit | commitdiff | tree | snapshot |
2009-02-26 |
westcott | parsimony with groups |
commit | commitdiff | tree | snapshot |
2009-02-26 |
pschloss | fix weighted unifrac bug in findIndex and randomize... |
commit | commitdiff | tree | snapshot |
2009-02-26 |
westcott | weightedcommand |
commit | commitdiff | tree | snapshot |
2009-02-24 |
westcott | changed unifrac.weighted() |
commit | commitdiff | tree | snapshot |
2009-02-24 |
westcott | changed unifrac.weighted() |
commit | commitdiff | tree | snapshot |
2009-02-24 |
westcott | changed unifrac.weighted() |
commit | commitdiff | tree | snapshot |
2009-02-24 |
westcott | test |
commit | commitdiff | tree | snapshot |
2009-02-24 |
pschloss | print tree debugger |
commit | commitdiff | tree | snapshot |
next |