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biopieces.git
2010-10-14 martinahansenported analyze_seq to ruby commit | commitdiff | tree | snapshot
2010-10-13 martinahansenfixed scores in bwa_seq commit | commitdiff | tree | snapshot
2010-10-13 martinahansenremoved local logging causing trouble commit | commitdiff | tree | snapshot
2010-10-13 martinahansenfixed SAM.pm qual scores from phred-33 to phred-64 commit | commitdiff | tree | snapshot
2010-10-13 martinahansenchanged bowtie_seq to use phred64 commit | commitdiff | tree | snapshot
2010-10-13 martinahansenpolished read_454 and added tests commit | commitdiff | tree | snapshot
2010-10-13 martinahansenpolished plot_scores commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded align ruby lib commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded fastq ruby lib commit | commitdiff | tree | snapshot
2010-10-12 martinahansenpolished write_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenslight bug fix of write_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded scores_to_dec commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded mask_seq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded solexa switch to read_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded read_fastq and added tests commit | commitdiff | tree | snapshot
2010-10-11 martinahansenupgraded find_genes commit | commitdiff | tree | snapshot
2010-09-28 martinahansenAlignTwoSeq.pm briefly revisited commit | commitdiff | tree | snapshot
2010-09-28 martinahansenfixed indentation in perl code commit | commitdiff | tree | snapshot
2010-09-23 martinahansencleanup of uclust_seq commit | commitdiff | tree | snapshot
2010-09-22 martinahansenpolishing on uclust_seq commit | commitdiff | tree | snapshot
2010-09-21 martinahansenadded uclust_seq Biopiece - Work in progress! commit | commitdiff | tree | snapshot
2010-09-20 martinahansenfixed typo in text in digest_seq commit | commitdiff | tree | snapshot
2010-09-20 martinahansenfixes and test for digest_seq commit | commitdiff | tree | snapshot
2010-09-20 martinahansenadded digest_seq Biopiece commit | commitdiff | tree | snapshot
2010-09-17 martinahansenadded Digest class to ruby code commit | commitdiff | tree | snapshot
2010-09-16 martinahansenadded pcr_seq Biopiece commit | commitdiff | tree | snapshot
2010-09-16 martinahansenadded reverse method to ruby Seq class commit | commitdiff | tree | snapshot
2010-09-13 martinahansenadded bin_vals biopiece and tests commit | commitdiff | tree | snapshot
2010-09-09 martinahansenported length_seq to ruby commit | commitdiff | tree | snapshot
2010-09-09 martinahansenfixing length_seq commit | commitdiff | tree | snapshot
2010-09-09 martinahansenadded Ruby version check commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of trailing newline in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of trailing newline in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of trailing newline in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of printf in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenadded progress_meter biopiece commit | commitdiff | tree | snapshot
2010-09-08 martinahansenfixed minor bug in write_align of pairwise protein... commit | commitdiff | tree | snapshot
2010-09-02 martinahansenadded scores_to_dec biopiece, wiki, and tests commit | commitdiff | tree | snapshot
2010-09-01 martinahansenreverting ruby unit test to old school commit | commitdiff | tree | snapshot
2010-09-01 martinahansenadded tests for mask_seq commit | commitdiff | tree | snapshot
2010-09-01 martinahansenadded mask_seq biopiece commit | commitdiff | tree | snapshot
2010-09-01 martinahansenreplaced option keys from strings to symbols in ruby... commit | commitdiff | tree | snapshot
2010-08-20 martinahansenshifted ruby biopiece records to use symbols instead... commit | commitdiff | tree | snapshot
2010-08-18 martinahansenadded zip reading to read_fasta commit | commitdiff | tree | snapshot
2010-08-18 martinahansenread_fasta now reads zipped fasta fails again commit | commitdiff | tree | snapshot
2010-08-17 martinahansenupdating test_read_fasta commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-16 martinahansenupdating seq.rb commit | commitdiff | tree | snapshot
2010-08-16 martinahansenupdateing seq.rb commit | commitdiff | tree | snapshot
2010-08-13 martinahansenfixed type bug in ruby code commit | commitdiff | tree | snapshot
2010-08-12 martinahansenpolishing testing suite commit | commitdiff | tree | snapshot
2010-08-12 martinahansenadded test for blast biopieces commit | commitdiff | tree | snapshot
2010-08-11 martinahansenruby code cleanup commit | commitdiff | tree | snapshot
2010-08-09 martinahansenadded lisence to ruby code commit | commitdiff | tree | snapshot
2010-08-06 martinahansenadded rdoc commit | commitdiff | tree | snapshot
2010-08-06 martinahansenfixed ruby test code commit | commitdiff | tree | snapshot
2010-08-06 martinahansenadded swapcase_seq written in RUBY commit | commitdiff | tree | snapshot
2010-08-06 martinahansendropping swapcase_seq tobereplaced commit | commitdiff | tree | snapshot
2010-08-06 martinahansenadded test for analyze_gc commit | commitdiff | tree | snapshot
2010-08-06 martinahansenruby exit status battle part #12312423 commit | commitdiff | tree | snapshot
2010-08-06 martinahansenadded -o option and tests to analyze_vals commit | commitdiff | tree | snapshot
2010-08-05 martinahansenadded test for add_ident commit | commitdiff | tree | snapshot
2010-08-05 martinahansenadded test_read_solexa to tests commit | commitdiff | tree | snapshot
2010-08-04 martinahansenasdfasdr commit | commitdiff | tree | snapshot
2010-08-04 martinahansenpolishing ruby code commit | commitdiff | tree | snapshot
2010-08-04 martinahansenadded write_tab tests commit | commitdiff | tree | snapshot
2010-08-04 martinahansenmore polishing of testing suite commit | commitdiff | tree | snapshot
2010-08-04 martinahansenremoving binary crap commit | commitdiff | tree | snapshot
2010-08-04 martinahansenpolishing on testing suite commit | commitdiff | tree | snapshot
2010-08-03 martinahansenadded more tests commit | commitdiff | tree | snapshot
2010-08-03 martinahansenhad to fix shebang in testing env commit | commitdiff | tree | snapshot
2010-08-03 martinahansentesting suite paths upgraded commit | commitdiff | tree | snapshot
2010-08-03 martinahansenfixed first bug in testing suite commit | commitdiff | tree | snapshot
2010-08-03 martinahansenadded testing suite commit | commitdiff | tree | snapshot
2010-08-03 martinahansencorrected slight bug in grab commit | commitdiff | tree | snapshot
2010-06-30 martinahansenadded trim_seq commit | commitdiff | tree | snapshot
2010-06-29 martinahansenadded biopieces mean_scores commit | commitdiff | tree | snapshot
2010-06-28 martinahansenadded ID to SCORE alias in KISS.pm commit | commitdiff | tree | snapshot
2010-06-28 martinahansenadded usearch_seq biopiece commit | commitdiff | tree | snapshot
2010-06-26 martinahansencorrected typo commit | commitdiff | tree | snapshot
2010-06-22 martinahansenmessing with exit in ruby - still commit | commitdiff | tree | snapshot
2010-06-22 martinahansencorrected type in log messages commit | commitdiff | tree | snapshot
2010-06-21 martinahansenpolishing exit in ruby code commit | commitdiff | tree | snapshot
2010-06-17 martinahansenadded list switch to *_vals biopieces commit | commitdiff | tree | snapshot
2010-06-17 martinahansenadded list switch to mean_vals commit | commitdiff | tree | snapshot
2010-06-17 martinahansenadded fixedstep biopieces commit | commitdiff | tree | snapshot
2010-06-16 martinahansenschrubbing UCSC.pm code commit | commitdiff | tree | snapshot
2010-06-16 martinahansenfixed s/Common/Filesys/ renaming in UCSC.pm commit | commitdiff | tree | snapshot
2010-06-16 martinahansenruby code fixing exit commit | commitdiff | tree | snapshot
2010-06-16 martinahansenruby code fixing exit commit | commitdiff | tree | snapshot
2010-06-15 martinahansenruby code schrubbing commit | commitdiff | tree | snapshot
2010-06-14 martinahansenfixed unit tests for biopieces.rb commit | commitdiff | tree | snapshot
2010-05-28 martinahansentrouble with list of list and class Cast commit | commitdiff | tree | snapshot
2010-05-28 martinahansensplitting class Biopieces commit | commitdiff | tree | snapshot
2010-05-28 martinahansensplitting class Biopieces commit | commitdiff | tree | snapshot
2010-05-28 martinahansenupdating ruby code commit | commitdiff | tree | snapshot
2010-05-28 martinahansencleaned up ruby dir commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/