]> git.donarmstrong.com Git - samtools.git/search
projects / samtools.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Write the correct ALT and PL in the SNP calling mode.
2010-09-01 Heng LiWrite the correct ALT and PL in the SNP calling mode.
 commit | commitdiff | tree
2010-09-01 Heng Limore commands for my own uses
 commit | commitdiff | tree
2010-09-01 Heng LiUtilities for processing VCF
 commit | commitdiff | tree
2010-08-31 Heng Lipreliminary contrast variant caller
 commit | commitdiff | tree
2010-08-31 Heng Liz' and z'' can be calculated
 commit | commitdiff | tree
2010-08-31 Heng Li * rename vcfout.c as call1.c
 commit | commitdiff | tree
2010-08-24 Heng Lifixed a bug in calculating the t statistics
 commit | commitdiff | tree
2010-08-24 Heng Li * samtools-0.1.8-13 (r698)
 commit | commitdiff | tree
2010-08-24 Heng Liadded regularized incomplete beta function
 commit | commitdiff | tree
2010-08-23 Heng Lichange the default correlation coefficient
 commit | commitdiff | tree
2010-08-23 Heng Liprint QUAL as floating numbers
 commit | commitdiff | tree
2010-08-23 Heng Li * samtools-0.1.8-12 (r692)
 commit | commitdiff | tree
2010-08-23 Heng Liremove VCF output in mpileup
 commit | commitdiff | tree
2010-08-23 Heng Li * use the revised MAQ error model for mpileup
 commit | commitdiff | tree
2010-08-20 Heng Liadded revised MAQ error model
 commit | commitdiff | tree
2010-08-18 Heng Liallow to read the prior from the error output. EM iteration...
commit | commitdiff | tree
2010-08-17 Heng Li * write a little more VCF header
 commit | commitdiff | tree
2010-08-17 Heng Liuse float for QUAL
 commit | commitdiff | tree
2010-08-14 Heng Lifaster for large sample size (in principle)
 commit | commitdiff | tree
2010-08-14 Heng Li * a numerically stable method to calculate z_{jk}
 commit | commitdiff | tree
2010-08-12 Heng Lifixed an issue in parsing integer
 commit | commitdiff | tree
2010-08-09 Heng Lido not print refname if file is converted from VCF
 commit | commitdiff | tree
2010-08-09 Heng Li * parse PL
 commit | commitdiff | tree
2010-08-09 Heng Li * fixed a bug in kstrtok@kstring.c
 commit | commitdiff | tree
2010-08-09 Heng Li * improved kstring (added kstrtok)
 commit | commitdiff | tree
2010-08-09 Heng Lihelp messages
 commit | commitdiff | tree
2010-08-09 Heng Liperform single-tail test for ED4
 commit | commitdiff | tree
2010-08-09 Heng Li * test depth, end distance and HWE
 commit | commitdiff | tree
2010-08-08 Heng Lireimplement incomplete gamma functions. no copy-paste
 commit | commitdiff | tree
2010-08-07 Heng Li * bcftools: add HWE (no testing for now)
 commit | commitdiff | tree
2010-08-06 Heng Li * Special functions: log(gamma()), erfc(), P(a,x)...
commit | commitdiff | tree
2010-08-06 Heng LiFisher's exact test
 commit | commitdiff | tree
2010-08-06 Heng Li * samtools-0.1.8-11 (r672)
 commit | commitdiff | tree
2010-08-05 Heng Li * the code base is stablized again.
 commit | commitdiff | tree
2010-08-05 Heng Liminor
 commit | commitdiff | tree
2010-08-05 Heng Liunfinished vcf parser
 commit | commitdiff | tree
2010-08-05 Heng Li * added prelimiary VCF parser (not finished)
 commit | commitdiff | tree
2010-08-04 Heng Li * allow to set min base q
 commit | commitdiff | tree
2010-08-04 Heng Lispec
 commit | commitdiff | tree
2010-08-04 Heng Liadded more examples
 commit | commitdiff | tree
2010-08-04 Heng Lifixed compilation error
 commit | commitdiff | tree
2010-08-04 Heng Limove bcftools to samtools
 commit | commitdiff | tree
2010-08-03 Heng Lifixed another minor bug
 commit | commitdiff | tree
2010-08-03 Heng Li * samtools-0.1.8-10 (r658)
 commit | commitdiff | tree
2010-08-03 Heng Li * fixed a bug
 commit | commitdiff | tree
2010-08-02 Heng Limissing a column in VCF output...
 commit | commitdiff | tree
2010-08-02 Heng Lifixed a memory leak
 commit | commitdiff | tree
2010-08-02 Heng Lifixed a bug in bcf reader
 commit | commitdiff | tree
2010-08-02 Heng Lifixed a bug
 commit | commitdiff | tree
2010-08-02 Heng Li * samtools-0.1.8-9 (r649)
 commit | commitdiff | tree
2010-08-02 Heng LiGenerate binary VCF
 commit | commitdiff | tree
2010-07-28 Heng Li * samtools-0.1.8-8 (r644)
 commit | commitdiff | tree
2010-07-28 Heng Li * fixed a STUPID bug, which cost me a lot of time.
 commit | commitdiff | tree
2010-07-28 Heng Lisupposedly this is THE correct implementation, but...
commit | commitdiff | tree
2010-07-28 Heng LiNOT ready yet. Going to make further changes...
 commit | commitdiff | tree
2010-07-26 Heng Li * samtools-0.1.8-7 (r639)
 commit | commitdiff | tree
2010-07-25 Heng Li * samtools-0.1.8-6 (r638)
 commit | commitdiff | tree
2010-07-24 Heng Liminor changes
 commit | commitdiff | tree
2010-07-24 Heng Liminor tweaks
 commit | commitdiff | tree
2010-07-24 Heng Liposterior expectation FINALLY working. I am so tired...
 commit | commitdiff | tree
2010-07-23 Heng Lianother minor fix to mpileup
 commit | commitdiff | tree
2010-07-23 Heng Liadded the format column
 commit | commitdiff | tree
2010-07-23 Heng Liadded an alternative prior
 commit | commitdiff | tree
2010-07-23 Heng Licalculate posterior allele frequency
 commit | commitdiff | tree
2010-07-23 Heng Li * samtools-0.1.8-3 (r627)
 commit | commitdiff | tree
2010-07-22 Heng Li * preliminary multisample SNP caller.
 commit | commitdiff | tree
2010-07-14 Heng Li * samtools-0.1.8-2 (r617)
 commit | commitdiff | tree
2010-07-14 Heng Li * added mutli-sample framework. It is not working...
commit | commitdiff | tree
2010-07-13 Heng Li * samtools-0.1.8-1 (r615)
 commit | commitdiff | tree
2010-07-12 Heng LiRelease samtools-0.1.8
 commit | commitdiff | tree
2010-07-12 Heng Lifixed a compiling issue for Windows
 commit | commitdiff | tree
2010-07-12 Heng Lifixed a bug in sorting when output to stdout (by Peter...
commit | commitdiff | tree
2010-07-09 Heng Lichange the command line option of pileup
 commit | commitdiff | tree
2010-07-09 Heng Limake pileup work with CIGAR with I/D at the beginning...
commit | commitdiff | tree
2010-07-09 Heng Li * make tview more friendly
 commit | commitdiff | tree
2010-07-08 Heng Li * samtools-0.1.7-r607
 commit | commitdiff | tree
2010-07-08 Heng Liremoved a debugging example
 commit | commitdiff | tree
2010-07-08 Heng Li * samtools-.1.7-18 (r605)
 commit | commitdiff | tree
2010-07-02 Heng Lifixed a minor bug in idxstats
 commit | commitdiff | tree
2010-06-16 Heng Lifixed a minor bug in indexing
 commit | commitdiff | tree
2010-06-15 Heng Lichange printf() to puts in exporting
 commit | commitdiff | tree
2010-06-14 Heng Liminor fix. No actual effect.
 commit | commitdiff | tree
2010-06-14 Heng Liadded Makefile targets to compile shared/dynamic library
 commit | commitdiff | tree
2010-06-13 Heng Li * samtools-0.1.7-17 (r596)
 commit | commitdiff | tree
2010-06-13 Heng Li * samtools-0.1.7-16 (r595)
 commit | commitdiff | tree
2010-06-13 Heng Lifixed a bug for unmapped sequences in indexing
 commit | commitdiff | tree
2010-06-12 Heng Lirename iterf as iter
 commit | commitdiff | tree
2010-06-12 Heng Li * samtools-0.1.7-15 (r592)
 commit | commitdiff | tree
2010-06-12 Heng Li * samtools-0.1.7-14 (r591)
 commit | commitdiff | tree
2010-06-12 Heng Li * samtools-0.1.7-13 (r590)
 commit | commitdiff | tree
2010-06-12 Heng Li * samtools-0.1.7-12 (r589)
 commit | commitdiff | tree
2010-06-11 Heng Li * samtools-0.1.7-11 (r588)
 commit | commitdiff | tree
2010-06-11 Heng Li * samtools-0.1.7-10 (r587)
 commit | commitdiff | tree
2010-06-11 Heng Li * samtools-0.1.7-9 (r586)
 commit | commitdiff | tree
2010-06-11 Heng Li * samtools-0.1.7-8 (r585)
 commit | commitdiff | tree
2010-06-11 Heng Li * samtools-0.1.7-7 (r584)
 commit | commitdiff | tree
2010-02-24 Heng LiUpdated export2sam.pl by Chris Saunders from Illumina.
 commit | commitdiff | tree
2010-02-11 Heng Liadded a hidden option in pileup to output the base...
commit | commitdiff | tree
2010-02-01 Heng Li * samtools-0.1.7-6
 commit | commitdiff | tree
2009-12-14 Heng Li * samtools-0.1.7-5 (r528)
 commit | commitdiff | tree
next
Mirror of samtools with my branches