]> git.donarmstrong.com Git - ool/lipid_simulation_formalism.git/log
ool/lipid_simulation_formalism.git
7 years agoadd missing DPPE acronym master
Don Armstrong [Wed, 22 Mar 2017 01:48:04 +0000 (18:48 -0700)]
add missing DPPE acronym

7 years agoadd changes raphael suggested; fix PG and POPC acronym
Don Armstrong [Wed, 22 Mar 2017 01:41:36 +0000 (18:41 -0700)]
add changes raphael suggested; fix PG and POPC acronym

7 years agofix angstroms
Don Armstrong [Tue, 21 Mar 2017 15:34:46 +0000 (08:34 -0700)]
fix angstroms

7 years agoadd author affiliations
Don Armstrong [Tue, 21 Mar 2017 15:28:27 +0000 (08:28 -0700)]
add author affiliations

7 years agofix up clean rule
Don Armstrong [Tue, 21 Mar 2017 15:06:57 +0000 (10:06 -0500)]
fix up clean rule

7 years agouse gitinfo2
Don Armstrong [Tue, 21 Mar 2017 15:04:40 +0000 (10:04 -0500)]
use gitinfo2

7 years agoadd the rest of raphael's changes
Don Armstrong [Tue, 21 Mar 2017 02:57:05 +0000 (19:57 -0700)]
add the rest of raphael's changes

7 years agoadd kinetic parameters
Don Armstrong [Tue, 21 Mar 2017 02:24:14 +0000 (19:24 -0700)]
add kinetic parameters

7 years agoadd start of raphael changes
Don Armstrong [Tue, 21 Mar 2017 02:24:05 +0000 (19:24 -0700)]
add start of raphael changes

7 years agoadd acronyms; use UTF-8 fonts
Don Armstrong [Tue, 21 Mar 2017 02:23:37 +0000 (19:23 -0700)]
add acronyms; use UTF-8 fonts

7 years agoadd gitignore
Don Armstrong [Fri, 3 Feb 2017 01:12:10 +0000 (17:12 -0800)]
add gitignore

7 years agoinclude references.bib
Don Armstrong [Fri, 3 Feb 2017 01:11:15 +0000 (17:11 -0800)]
include references.bib

7 years agouse latexmk
Don Armstrong [Fri, 3 Feb 2017 01:11:05 +0000 (17:11 -0800)]
use latexmk

7 years agodescribe progeny tracking
Don Armstrong [Fri, 3 Feb 2017 01:10:59 +0000 (17:10 -0800)]
describe progeny tracking

7 years agodescribe environment size calculations
Don Armstrong [Fri, 3 Feb 2017 01:10:51 +0000 (17:10 -0800)]
describe environment size calculations

7 years agocomment out analyzing output section
Don Armstrong [Fri, 3 Feb 2017 01:10:43 +0000 (17:10 -0800)]
comment out analyzing output section

7 years agoswitch to cleveref
Don Armstrong [Fri, 3 Feb 2017 01:10:35 +0000 (17:10 -0800)]
switch to cleveref

7 years agoswitch to knitr and add chunk names
Don Armstrong [Fri, 3 Feb 2017 00:56:29 +0000 (16:56 -0800)]
switch to knitr and add chunk names

7 years agoremove omer points and references
Don Armstrong [Thu, 2 Feb 2017 21:06:35 +0000 (13:06 -0800)]
remove omer points and references

8 years agouse knitr caching
Don Armstrong [Sat, 29 Oct 2016 00:45:15 +0000 (17:45 -0700)]
use knitr caching

8 years agouse knitr for formalism
Don Armstrong [Thu, 11 Aug 2016 18:26:38 +0000 (11:26 -0700)]
use knitr for formalism

13 years agoupdate notes, start competition work
don [Wed, 27 Jul 2011 23:08:11 +0000 (23:08 +0000)]
update notes, start competition work

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@944 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years ago * update kinetic formalism
don [Wed, 18 Aug 2010 08:55:54 +0000 (08:55 +0000)]
 * update kinetic formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@614 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years ago * update kinetic_formalism
don [Wed, 18 Aug 2010 03:10:03 +0000 (03:10 +0000)]
 * update kinetic_formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@613 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalism and add competion start
don [Tue, 17 Aug 2010 23:59:46 +0000 (23:59 +0000)]
update kinetic formalism and add competion start

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@611 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate formalisms some more
don [Tue, 17 Aug 2010 06:32:16 +0000 (06:32 +0000)]
update formalisms some more

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@606 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalism with program notes and add omer points
don [Mon, 9 Aug 2010 06:34:10 +0000 (06:34 +0000)]
update kinetic formalism with program notes and add omer points

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@595 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agofix up CF1 explanation and length issues; remove complaint about unsaturation
don [Sun, 20 Jun 2010 18:24:27 +0000 (18:24 +0000)]
fix up CF1 explanation and length issues; remove complaint about unsaturation

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@542 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoadd the length adjustment concerns
don [Thu, 17 Jun 2010 21:51:02 +0000 (21:51 +0000)]
add the length adjustment concerns

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@537 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoditch Unsaturation Backward
don [Wed, 16 Jun 2010 23:59:36 +0000 (23:59 +0000)]
ditch Unsaturation Backward

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@532 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalism
don [Wed, 16 Jun 2010 23:41:06 +0000 (23:41 +0000)]
update kinetic formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@528 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agotweak length and complex formation formalisms
don [Wed, 16 Jun 2010 20:19:56 +0000 (20:19 +0000)]
tweak length and complex formation formalisms

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@527 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agostandard deviation of the absolute value of the log
don [Wed, 16 Jun 2010 04:21:16 +0000 (04:21 +0000)]
standard deviation of the absolute value of the log

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@526 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoswitch to new curvature formalism
don [Wed, 16 Jun 2010 03:53:55 +0000 (03:53 +0000)]
switch to new curvature formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@525 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalisms again
don [Wed, 16 Jun 2010 01:50:15 +0000 (01:50 +0000)]
update kinetic formalisms again

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@524 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalism
don [Sat, 12 Jun 2010 01:16:51 +0000 (01:16 +0000)]
update kinetic formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@523 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalism
don [Sat, 12 Jun 2010 00:23:44 +0000 (00:23 +0000)]
update kinetic formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@522 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate kinetic formalism
don [Fri, 11 Jun 2010 21:24:50 +0000 (21:24 +0000)]
update kinetic formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@521 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoswitch length forward to have a length of 2
don [Sat, 5 Jun 2010 22:33:39 +0000 (22:33 +0000)]
switch length forward to have a length of 2

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@512 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agofix capitalization of Forward; new formalism
don [Wed, 26 May 2010 08:16:57 +0000 (08:16 +0000)]
fix capitalization of Forward; new formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@501 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agofix kinetic formalism
don [Wed, 26 May 2010 00:51:49 +0000 (00:51 +0000)]
fix kinetic formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@500 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate formalisms with kcal units
don [Tue, 25 May 2010 23:13:04 +0000 (23:13 +0000)]
update formalisms with kcal units

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@499 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoupdate formalism
don [Fri, 14 May 2010 02:15:48 +0000 (02:15 +0000)]
update formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@497 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoadjust plot label angles
don [Wed, 12 May 2010 21:27:52 +0000 (21:27 +0000)]
adjust plot label angles

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@495 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years ago * Change curvature formalism to match paper
don [Wed, 12 May 2010 19:22:52 +0000 (19:22 +0000)]
 * Change curvature formalism to match paper
 * Fix charge backwards to go in the proper direction; decrease base to 20

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@494 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoadd new formalism
don [Wed, 12 May 2010 19:01:04 +0000 (19:01 +0000)]
add new formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@493 25fa0111-c432-4dab-af88-9f31a2f6ac42

14 years agoadd kinetic formalisms
don [Wed, 12 May 2010 05:33:04 +0000 (05:33 +0000)]
add kinetic formalisms

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@492 25fa0111-c432-4dab-af88-9f31a2f6ac42

15 years agodelete old parameter
don [Fri, 18 Sep 2009 18:56:58 +0000 (18:56 +0000)]
delete old parameter

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@338 25fa0111-c432-4dab-af88-9f31a2f6ac42

15 years agoupdate papierschreiben and formalisms
don [Thu, 17 Sep 2009 20:09:15 +0000 (20:09 +0000)]
update papierschreiben and formalisms

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@332 25fa0111-c432-4dab-af88-9f31a2f6ac42

15 years agoadd new formalism
don [Sun, 30 Aug 2009 18:53:09 +0000 (18:53 +0000)]
add new formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@286 25fa0111-c432-4dab-af88-9f31a2f6ac42

15 years agoupdate formalism
don [Wed, 19 Aug 2009 01:03:03 +0000 (01:03 +0000)]
update formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@264 25fa0111-c432-4dab-af88-9f31a2f6ac42

15 years agoadd formalism and new formalism
don [Mon, 17 Aug 2009 23:33:00 +0000 (23:33 +0000)]
add formalism and new formalism

git-svn-id: svn+ssh://hemlock.ucr.edu/srv/svn/misc/trunk/origins_of_life@261 25fa0111-c432-4dab-af88-9f31a2f6ac42