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added grid to BGB
[biopieces.git] / bp_bin /
2010-03-17 martinahansenremoved indexing from BGB_upload tree | commitdiff
2010-03-15 martinahansenadded N block switch to blat_seq tree | commitdiff
2010-03-08 martinahansentweaks to blat_seq to avoid introns in fastMap - still... tree | commitdiff
2010-03-03 martinahansenadded find_gaps tree | commitdiff
2010-03-02 martinahansenmerged BGB::Common.pm to BGB::Track.pm tree | commitdiff
2010-03-01 martinahansenadded wiggle to BGB tree | commitdiff
2010-02-11 martinahansenadded option for database search to blat_seq tree | commitdiff
2010-02-09 martinahansenmoving back to binned index and using JSON for storing tree | commitdiff
2010-02-06 martinahansenremoved dir check from create_bowtie_index tree | commitdiff
2010-02-06 martinahansenshifted to NC list in BGB tree | commitdiff
2010-02-06 martinahansenadded uniq_seq tree | commitdiff
2010-02-06 martinahansenfix of read_kiss code comments tree | commitdiff
2010-01-31 martinahansenfixed sequence type guessing in create_blast_index tree | commitdiff
2010-01-26 martinahansenfixed a number of issues - grave bug in complement_seq! tree | commitdiff
2010-01-25 martinahansenadd q_id specificity to assemblo_contigs tree | commitdiff
2010-01-25 martinahansenadded strand specificity fo assemble_contigs tree | commitdiff
2010-01-24 martinahansencleanup BGB stuff tree | commitdiff
2010-01-21 martinahansenadded plot_lines tree | commitdiff
2010-01-19 martinahansenchanged uclust engine from CD-hit to uclust tree | commitdiff
2010-01-13 martinahansenchanged engine in cluster_seq to uclust tree | commitdiff
2010-01-12 martinahansenadded cluster_seq tree | commitdiff
2010-01-05 martinahansencleanup of BGB tree | commitdiff
2009-12-25 martinahansenadded BGB_delete_track tree | commitdiff
2009-12-17 martinahansenadded BGB_read_track tree | commitdiff
2009-12-16 martinahansenfixed bug in grab tree | commitdiff
2009-12-15 martinahansenfixed bug in list_biopieces tree | commitdiff
2009-12-15 martinahansenadded find_genes tree | commitdiff
2009-12-15 martinahansenfixed upload pipe tree | commitdiff
2009-12-14 martinahansenadded BGB_intersect tree | commitdiff
2009-12-14 martinahansenrenamed upload_to_bbrowser to BGB_upload tree | commitdiff
2009-12-14 martinahansenadded BGB_list tree | commitdiff
2009-12-11 martinahansenfixed bug in translate_seq tree | commitdiff
2009-12-10 martinahansenfixed bug in uploader tree | commitdiff
2009-12-10 martinahansenfixed bug in upload_to_bbrowser tree | commitdiff
2009-12-08 martinahansenadded read_ace tree | commitdiff
2009-12-01 martinahansenfixed IO rename in write_kiss tree | commitdiff
2009-12-01 martinahansenrename mistake fix2 tree | commitdiff
2009-12-01 martinahansenrename mistake fix1 tree | commitdiff
2009-12-01 martinahansenrenamed KISS browser to Biopiece browser tree | commitdiff
2009-11-25 martinahansenmore KISS tree | commitdiff
2009-11-24 martinahansenkiss_sort() tree | commitdiff
2009-11-24 martinahansenfixed KISS tree | commitdiff
2009-11-24 martinahansenrewrote upload_to_KISS tree | commitdiff
2009-11-16 martinahansenhacked read_soft to deal with soft_files wo platform... tree | commitdiff
2009-11-16 martinahansenmisc changes tree | commitdiff
2009-11-09 martinahansenadded analyze_snp tree | commitdiff
2009-11-04 martinahansenfixed details in bowtie_seq tree | commitdiff
2009-10-30 martinahansenadded read_sam tree | commitdiff
2009-10-29 martinahansenfixed bug in patscan_seq tree | commitdiff
2009-10-29 martinahansenmodified split_seq tree | commitdiff
2009-10-27 martinahansenmore work on KISS tree | commitdiff
2009-10-27 martinahansenrevised KISS format tree | commitdiff
2009-10-23 martinahansenremoved jbrowse support tree | commitdiff
2009-10-21 martinahansenchanged KISS format tree | commitdiff
2009-10-21 martinahansenadded upload_to_KISS tree | commitdiff
2009-10-21 martinahansenadded kiss biopieces tree | commitdiff
2009-10-21 martinahansenfixed dna/DNA bug in Align.pm tree | commitdiff
2009-10-18 martinahansenadded write_gff tree | commitdiff
2009-10-17 martinahansenrenaming create_blast_db to create_blast_index tree | commitdiff
2009-10-17 martinahansenchanged options in create_blast_db tree | commitdiff
2009-09-30 martinahansenfixed bug in get_genome_seq tree | commitdiff
2009-09-28 martinahansenadded bwa_seq tree | commitdiff
2009-09-21 martinahansenadded assemble_contigs tree | commitdiff
2009-09-21 martinahansenadded format to compute tree | commitdiff
2009-09-21 martinahansencleaned up calc_fixedstep tree | commitdiff
2009-09-18 martinahansenadded features to calc_fixedstep tree | commitdiff
2009-09-18 martinahansenadded strand to assemble_tag_contigs tree | commitdiff
2009-09-18 martinahansenadded ugly hack to assemble_tag_contigs tree | commitdiff
2009-09-17 martinahansenadded get_seq tree | commitdiff
2009-09-16 martinahansenfixed match_seq bug tree | commitdiff
2009-09-09 martinahansenadded BED entry output to check_bed tree | commitdiff
2009-09-08 martinahansenadded BWA index support tree | commitdiff
2009-09-08 martinahansenunfucked bowtie_index tree | commitdiff
2009-09-08 martinahansenfuckup tree | commitdiff
2009-09-07 martinahansensanitized create_bowtie_index code tree | commitdiff
2009-09-07 martinahansensanitized create_bowtie_seq tree | commitdiff
2009-09-07 martinahansenfixed solexa/phred code tree | commitdiff
2009-09-04 martinahansenchanged options of read_solexa and read_fastq - undocum... tree | commitdiff
2009-09-04 martinahansenadded mate_pair_dist tree | commitdiff
2009-09-04 martinahansendisabled quality score conversion in FASTQ and Solexa tree | commitdiff
2009-09-02 martinahansenfixed issues in fastq handling tree | commitdiff
2009-08-28 martinahansenmore work on AlignTwoSeq tree | commitdiff
2009-08-27 martinahansenworking on AlignTwoSeq tree | commitdiff
2009-08-25 martinahansenfixed cpu switch in bowtie_seq tree | commitdiff
2009-08-20 martinahansenfinished rescan_seq tree | commitdiff
2009-08-18 martinahansenupdated rescan_seq tree | commitdiff
2009-08-14 martinahansenadded rescan_seq Restriction Enzyme scanner tree | commitdiff
2009-08-12 martinahansenadded analyze_gc tree | commitdiff
2009-08-10 martinahansenadded nifty # detail to read_tab tree | commitdiff
2009-08-10 martinahansenadded --logscale_y switch to relevant plot_* biopieces tree | commitdiff
2009-08-10 martinahansenadded --no_gaps switch in blast_seq tree | commitdiff
2009-08-04 martinahansenadded a skip_scores switch to read_solexa and read_fastq tree | commitdiff
2009-08-02 martinahansenadded get_embl_entry tree | commitdiff
2009-07-29 martinahansenadded embl_index tree | commitdiff
2009-07-29 martinahansenadded .biopiecesrc tree | commitdiff
2009-07-28 martinahansenfinished write_mysql tree | commitdiff
2009-07-28 martinahansenchanged read_solexa tree | commitdiff
2009-07-28 martinahansenadded quality threshold to read_fastq tree | commitdiff
2009-07-27 martinahansenadded write_mysql tree | commitdiff
2009-07-27 martinahansenfixed list_mysql_databases tree | commitdiff
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