added tests for mask_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1073 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/mask_seq.in b/bp_test/in/mask_seq.in
new file mode 100644 (file)
index 0000000..aed3c6a
--- /dev/null
+++ b/bp_test/in/mask_seq.in
@@ -0,0 +1,3 @@
+SEQ: AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~
+---

diff --git a/bp_test/out/mask_seq.out.1 b/bp_test/out/mask_seq.out.1
new file mode 100644 (file)
index 0000000..f8c5a3b
--- /dev/null
+++ b/bp_test/out/mask_seq.out.1
@@ -0,0 +1,3 @@
+SEQ: aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~
+---

diff --git a/bp_test/out/mask_seq.out.2 b/bp_test/out/mask_seq.out.2
new file mode 100644 (file)
index 0000000..3ae8803
--- /dev/null
+++ b/bp_test/out/mask_seq.out.2
@@ -0,0 +1,3 @@
+SEQ: aaaaaaaaaaaaaaaaaaaaaaaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~
+---

diff --git a/bp_test/out/mask_seq.out.3 b/bp_test/out/mask_seq.out.3
new file mode 100644 (file)
index 0000000..6539730
--- /dev/null
+++ b/bp_test/out/mask_seq.out.3
@@ -0,0 +1,3 @@
+SEQ: aaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~
+---

diff --git a/bp_test/test/test_mask_seq b/bp_test/test/test_mask_seq
new file mode 100755 (executable)
index 0000000..182584a
--- /dev/null
+++ b/bp_test/test/test_mask_seq
@@ -0,0 +1,15 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -c 0 -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -c 0 -b 59 -O $tmp"
+assert_no_diff $tmp $out.2
+clean
+
+run "$bp -I $in -c 5 -b 33 -O $tmp"
+assert_no_diff $tmp $out.3
+clean