fixed bug in patscan_seq arguments

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1536 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/patscan_seq b/bp_bin/patscan_seq
index e09efde94bda61796dd7bf44fd63c2622312e612..194aaae7c812c42f6790d57272cf858bd8918d4f 100755 (executable)
--- a/bp_bin/patscan_seq
+++ b/bp_bin/patscan_seq
@@ -46,7 +46,7 @@ class Patscan
   end
 
   # Method to run Patscan
-  def run(comp = nil, type = nil, max_mis = nil, max_hit = nil, verbose = nil)
+  def run(comp = nil, type = nil, max_hit = nil, max_mis = nil, verbose = nil)
     args = []
     args << "scan_for_matches"
     args << "-c"            if comp