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some displaying issue in rsem-calculate-expression is fixed
author
Bo Li
<bli@cs.wisc.edu>
Fri, 11 Nov 2011 02:17:26 +0000
(20:17 -0600)
committer
Bo Li
<bli@cs.wisc.edu>
Fri, 11 Nov 2011 02:17:26 +0000
(20:17 -0600)
rsem-calculate-expression
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diff --git
a/rsem-calculate-expression
b/rsem-calculate-expression
index 14679fff7340ab459ccbe8def6a61139cf9e548c..7a9092b90f8ef87b266ba0666b1e8f0f363046c0 100755
(executable)
--- a/
rsem-calculate-expression
+++ b/
rsem-calculate-expression
@@
-520,11
+520,11
@@
The path to the bowtie executables. (Default: the path to the bowtie executables
Input quality scores are encoded as Phred+33. (Default: on)
=item B<--phred64-quals>
-
+
Input quality scores are encoded as Phred+64 (default for GA Pipeline ver. >= 1.3). (Default: off)
=item B<--solexa-quals>
-
+
Input quality scores are solexa encoded (from GA Pipeline ver. < 1.3). (Default: off)
=item B<--forward-prob> <double>