added tests of calc_N50

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1240 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/calc_N50.in b/bp_test/in/calc_N50.in
new file mode 100644 (file)
index 0000000..b973713
--- /dev/null
+++ b/bp_test/in/calc_N50.in
@@ -0,0 +1,20 @@
+SEQ_NAME: test1
+SEQ: ATGCACATTG
+SEQ_LEN: 10
+---
+SEQ_NAME: test2
+SEQ: ATGCACATTGATGCACATTG
+SEQ_LEN: 20
+---
+SEQ_NAME: test3
+SEQ: ATGCACATTGATGCACATTGATGCACATTG
+SEQ_LEN: 30
+---
+SEQ_NAME: test4
+SEQ: ATGCACATTGATGCACATTGATGCACATTGATGCACATTG
+SEQ_LEN: 40
+---
+SEQ_NAME: test5
+SEQ: ATGCACATTGATGCACATTGATGCACATTGATGCACATTGATGCACATTG
+SEQ_LEN: 50
+---

diff --git a/bp_test/out/calc_N50.out.1 b/bp_test/out/calc_N50.out.1
new file mode 100644 (file)
index 0000000..6e4ddd2
--- /dev/null
+++ b/bp_test/out/calc_N50.out.1
@@ -0,0 +1,22 @@
+SEQ_NAME: test1
+SEQ: ATGCACATTG
+SEQ_LEN: 10
+---
+SEQ_NAME: test2
+SEQ: ATGCACATTGATGCACATTG
+SEQ_LEN: 20
+---
+SEQ_NAME: test3
+SEQ: ATGCACATTGATGCACATTGATGCACATTG
+SEQ_LEN: 30
+---
+SEQ_NAME: test4
+SEQ: ATGCACATTGATGCACATTGATGCACATTGATGCACATTG
+SEQ_LEN: 40
+---
+SEQ_NAME: test5
+SEQ: ATGCACATTGATGCACATTGATGCACATTGATGCACATTGATGCACATTG
+SEQ_LEN: 50
+---
+N50: 40
+---

diff --git a/bp_test/out/calc_N50.out.2 b/bp_test/out/calc_N50.out.2
new file mode 100644 (file)
index 0000000..3374b60
--- /dev/null
+++ b/bp_test/out/calc_N50.out.2
@@ -0,0 +1,2 @@
+N50: 40
+---

diff --git a/bp_test/test/test_calc_N50 b/bp_test/test/test_calc_N50
new file mode 100755 (executable)
index 0000000..20dfa3d
--- /dev/null
+++ b/bp_test/test/test_calc_N50
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -o $tmp -x"
+assert_no_diff $tmp $out.2
+clean