added features to calc_fixedstep

git-svn-id: http://biopieces.googlecode.com/svn/trunk@677 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/calc_fixedstep b/bp_bin/calc_fixedstep
index 49c9a76d207b9581ff8c4e2fc975ece8de7ef7b4..17c3d0d981f60ac28dba6a33c53834dbc8b73e0e 100755 (executable)
--- a/bp_bin/calc_fixedstep
+++ b/bp_bin/calc_fixedstep
@@ -42,7 +42,9 @@ my ( $options, $in, $out, $record, $tmp_dir, $bed_file, $fh_in, $fh_out,
 
 $options = Maasha::Biopieces::parse_options(
     [
-        { long => 'check', short => 'C', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+        { long => 'check',     short => 'C', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+        { long => 'use_score', short => 'u', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+        { long => 'use_log10', short => 'l', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
     ]   
 );