fixed cpu switch in bowtie_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@644 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_bin/bowtie_seq b/bp_bin/bowtie_seq
index f6de2c5da01cc980fc2ce5e8628d884aeadc4c06..cffcd32b10124500dc53482e44ef6110cf80daf2 100755 (executable)
--- a/bp_bin/bowtie_seq
+++ b/bp_bin/bowtie_seq
@@ -94,6 +94,7 @@ close $fh_out;
 push @args, "-n $options->{ 'mismatches' }";
 push @args, "-v $options->{ 'mismatches' }";  # DANGER: using seed mismatches as alignment mismatches - may work, may not!
 push @args, "-f" if $type eq "FASTA";
+push @args, "-p $options->{ 'cpus' }";
 
 if ( defined $options->{ 'max_hits' } ) {
     push @args, "-k $options->{ 'max_hits' }";