Fixed a minor bug which only affects paired-end reads for reporting how many alignmen...

diff --git a/BamWriter.h b/BamWriter.h
index a4e7dc523a3cb8f0acbf3d903dd021142df64eab..2a325d6cb46901760ef1cebe01b5cbbba1136ee7 100644 (file)
--- a/BamWriter.h
+++ b/BamWriter.h
@@ -106,7 +106,7 @@ void BamWriter::work(HitWrapper<PairedEndHit> wrapper) {
        bam1_t *b, *b2;
        PairedEndHit *hit;
 
-       int cnt = 0;
+       HIT_INT_TYPE cnt = 0;
 
        b = bam_init1();
        b2 = bam_init1();