-casts << {:long=>'identity', :short=>'i', :type=>'float', :mandatory=>true, :default=>0.97, :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'cluster_min', :short=>'c', :type=>'uint', :mandatory=>true, :default=>2, :allowed=>nil, :disallowed=>"0"}
-casts << {:long=>'frequency_min', :short=>'f', :type=>'uint', :mandatory=>true, :default=>2, :allowed=>nil, :disallowed=>"0"}
-casts << {:long=>'quality_min', :short=>'q', :type=>'uint', :mandatory=>true, :default=>20, :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'consensus_min', :short=>'C', :type=>'float', :mandatory=>true, :default=>0.2, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'cluster_ident', :short=>'i', :type=>'float', :mandatory=>true, :default=>0.97, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'cluster_min', :short=>'c', :type=>'uint', :mandatory=>true, :default=>1, :allowed=>nil, :disallowed=>"0"}
+casts << {:long=>'sequence_min', :short=>'s', :type=>'uint', :mandatory=>true, :default=>1, :allowed=>nil, :disallowed=>"0"}
+casts << {:long=>'residue_min', :short=>'r', :type=>'float', :mandatory=>true, :default=>0.3, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'gap_max', :short=>'g', :type=>'float', :mandatory=>true, :default=>0.4, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'quality_min', :short=>'q', :type=>'uint', :mandatory=>true, :default=>10, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'quality_mean', :short=>'Q', :type=>'uint', :mandatory=>true, :default=>15, :allowed=>nil, :disallowed=>nil}