options = Biopieces.options_parse(ARGV, casts)
tmpdir = Biopieces.mktmpdir
options = Biopieces.options_parse(ARGV, casts)
tmpdir = Biopieces.mktmpdir
infile1 = File.join(tmpdir, "in1.fna")
infile2 = File.join(tmpdir, "in2.fna")
outfile = File.join(tmpdir, "blast.out")
infile1 = File.join(tmpdir, "in1.fna")
infile2 = File.join(tmpdir, "in2.fna")
outfile = File.join(tmpdir, "blast.out")
got1 = true
type1 = Seq.new(nil, record[:SEQ][0 ... 100]).type_guess
got1 = true
type1 = Seq.new(nil, record[:SEQ][0 ... 100]).type_guess