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Merge BamMultiReader and SetRegion into bamtools convert
authorErik Garrison <erik.garrison@bc.edu>
Wed, 7 Jul 2010 19:54:39 +0000 (15:54 -0400)
committerErik Garrison <erik.garrison@bc.edu>
Wed, 7 Jul 2010 19:54:39 +0000 (15:54 -0400)
commit155ba46a7dc23b749cc353b194f7ae6336f9f23d
treea6da98bd1f9932d74f999da983d4c6c344a2669ftree | snapshot
parent2ffdeb8efe1f8e7b3f3152034ee6ea643200dbb3commit | diff
Merge BamMultiReader and SetRegion into bamtools convert

This commit merges the BamMultiReader and SetRegion method into the
conversion tool.  This greatly simplifies the process of dumping
alignments from regions in a set of bam files.

Breaking in this commit: stdin input by default.  To be fixed in a
subsequent commit.
bamtools_convert.cpp diff | blob | history
Branch of bamtools which has rudimentary Debian packaging