]>
author | martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d> | |
Thu, 26 Jun 2008 01:33:55 +0000 (01:33 +0000) | ||
committer | martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d> | |
Thu, 26 Jun 2008 01:33:55 +0000 (01:33 +0000) | ||
commit | 54de880e571a403a6a67f83f1edbe222482a1de6 | |
tree | 04479947c5764da94c5259b43a15a2f99d521fbf | tree | snapshot |
parent | 1e9ad5a70a3bc1fe63701bd3c770dc8c053039dc | commit | diff |
INSTALL | [new file with mode: 0644] | blob |
LICENCE | [new file with mode: 0644] | blob |
bp_conf/README | [new file with mode: 0644] | blob |
bp_conf/bashrc | [new file with mode: 0644] | blob |
bp_data/README | [new file with mode: 0644] | blob |
bp_data/human_cytobands.txt | [new file with mode: 0644] | blob |
bp_data/mouse_cytobands.txt | [new file with mode: 0644] | blob |
bp_doc/biopieces_cookbook.lyx | [new file with mode: 0644] | blob |
bp_doc/biotools_cookbook.lyx | [new file with mode: 0644] | blob |
bp_doc/biotools_cookbook.pdf | [new file with mode: 0644] | blob |
bp_doc/biotools_cookbook.tex | [new file with mode: 0644] | blob |
bp_doc/biotools_presentation.odp | [new file with mode: 0644] | blob |
bp_doc/chrdist.pdf | [new file with mode: 0644] | blob |
bp_doc/chrdist.ps | [new file with mode: 0644] | blob |
bp_doc/chrdist_ascii.png | [new file with mode: 0644] | blob |
bp_doc/dotplot.pdf | [new file with mode: 0644] | blob |
bp_doc/dotplot.ps | [new file with mode: 0644] | blob |
bp_doc/histogram.png | [new file with mode: 0644] | blob |
bp_doc/karyogram.png | [new file with mode: 0644] | blob |
bp_doc/karyogram.svg | [new file with mode: 0644] | blob |
bp_doc/lendist.pdf | [new file with mode: 0644] | blob |
bp_doc/lendist.ps | [new file with mode: 0644] | blob |
bp_doc/lendist_ascii.png | [new file with mode: 0644] | blob |
bp_doc/seqlogo.png | [new file with mode: 0644] | blob |
bp_doc/seqlogo.svg | [new file with mode: 0644] | blob |
bp_scripts/add_ident | [new file with mode: 0755] | blob |
bp_scripts/align_seq | [new file with mode: 0755] | blob |
bp_scripts/analyze_bed | [new file with mode: 0755] | blob |
bp_scripts/analyze_seq | [new file with mode: 0755] | blob |
bp_scripts/analyze_tags | [new file with mode: 0755] | blob |
bp_scripts/analyze_vals | [new file with mode: 0755] | blob |
bp_scripts/blast_seq | [new file with mode: 0755] | blob |
bp_scripts/blat_seq | [new file with mode: 0755] | blob |
bp_scripts/calc_bit_scores | [new file with mode: 0755] | blob |
bp_scripts/complement_seq | [new file with mode: 0755] | blob |
bp_scripts/complexity_seq | [new file with mode: 0755] | blob |
bp_scripts/compute | [new file with mode: 0755] | blob |
bp_scripts/count_records | [new file with mode: 0755] | blob |
bp_scripts/count_vals | [new file with mode: 0755] | blob |
bp_scripts/create_blast_db | [new file with mode: 0755] | blob |
bp_scripts/create_vmatch_index | [new file with mode: 0755] | blob |
bp_scripts/create_weight_matrix | [new file with mode: 0755] | blob |
bp_scripts/extract_seq | [new file with mode: 0755] | blob |
bp_scripts/flip_tab | [new file with mode: 0755] | blob |
bp_scripts/fold_seq | [new file with mode: 0755] | blob |
bp_scripts/get_genome_align | [new file with mode: 0755] | blob |
bp_scripts/get_genome_phastcons | [new file with mode: 0755] | blob |
bp_scripts/get_genome_seq | [new file with mode: 0755] | blob |
bp_scripts/grab | [new file with mode: 0755] | blob |
bp_scripts/head_records | [new file with mode: 0755] | blob |
bp_scripts/invert_align | [new file with mode: 0755] | blob |
bp_scripts/length_seq | [new file with mode: 0755] | blob |
bp_scripts/length_vals | [new file with mode: 0755] | blob |
bp_scripts/list_biotools | [new file with mode: 0755] | blob |
bp_scripts/match_seq | [new file with mode: 0755] | blob |
bp_scripts/max_vals | [new file with mode: 0755] | blob |
bp_scripts/mean_vals | [new file with mode: 0755] | blob |
bp_scripts/median_vals | [new file with mode: 0755] | blob |
bp_scripts/merge_vals | [new file with mode: 0755] | blob |
bp_scripts/min_vals | [new file with mode: 0755] | blob |
bp_scripts/oligo_freq | [new file with mode: 0755] | blob |
bp_scripts/patscan_seq | [new file with mode: 0755] | blob |
bp_scripts/plot_chrdist | [new file with mode: 0755] | blob |
bp_scripts/plot_histogram | [new file with mode: 0755] | blob |
bp_scripts/plot_karyogram | [new file with mode: 0755] | blob |
bp_scripts/plot_lendist | [new file with mode: 0755] | blob |
bp_scripts/plot_matches | [new file with mode: 0755] | blob |
bp_scripts/plot_phastcons_profiles | [new file with mode: 0755] | blob |
bp_scripts/plot_seqlogo | [new file with mode: 0755] | blob |
bp_scripts/print_usage | [new file with mode: 0755] | blob |
bp_scripts/random_records | [new file with mode: 0755] | blob |
bp_scripts/read_2bit | [new file with mode: 0755] | blob |
bp_scripts/read_align | [new file with mode: 0755] | blob |
bp_scripts/read_bed | [new file with mode: 0755] | blob |
bp_scripts/read_blast_tab | [new file with mode: 0755] | blob |
bp_scripts/read_embl | [new file with mode: 0755] | blob |
bp_scripts/read_fasta | [new file with mode: 0755] | blob |
bp_scripts/read_gff | [new file with mode: 0755] | blob |
bp_scripts/read_mysql | [new file with mode: 0755] | blob |
bp_scripts/read_phastcons | [new file with mode: 0755] | blob |
bp_scripts/read_psl | [new file with mode: 0755] | blob |
bp_scripts/read_soft | [new file with mode: 0755] | blob |
bp_scripts/read_solexa | [new file with mode: 0755] | blob |
bp_scripts/read_solid | [new file with mode: 0755] | blob |
bp_scripts/read_stockholm | [new file with mode: 0755] | blob |
bp_scripts/read_tab | [new file with mode: 0755] | blob |
bp_scripts/remove_indels | [new file with mode: 0755] | blob |
bp_scripts/remove_keys | [new file with mode: 0755] | blob |
bp_scripts/rename_keys | [new file with mode: 0755] | blob |
bp_scripts/reverse_seq | [new file with mode: 0755] | blob |
bp_scripts/shuffle_seq | [new file with mode: 0755] | blob |
bp_scripts/sort_records | [new file with mode: 0755] | blob |
bp_scripts/split_bed | [new file with mode: 0755] | blob |
bp_scripts/split_seq | [new file with mode: 0755] | blob |
bp_scripts/sum_vals | [new file with mode: 0755] | blob |
bp_scripts/tile_seq | [new file with mode: 0755] | blob |
bp_scripts/translate_seq | [new file with mode: 0755] | blob |
bp_scripts/transliterate_seq | [new file with mode: 0755] | blob |
bp_scripts/transliterate_vals | [new file with mode: 0755] | blob |
bp_scripts/uniq_vals | [new file with mode: 0755] | blob |
bp_scripts/upload_to_ucsc | [new file with mode: 0755] | blob |
bp_scripts/uppercase_seq | [new file with mode: 0755] | blob |
bp_scripts/vmatch_seq | [new file with mode: 0755] | blob |
bp_scripts/write_2bit | [new file with mode: 0755] | blob |
bp_scripts/write_align | [new file with mode: 0755] | blob |
bp_scripts/write_bed | [new file with mode: 0755] | blob |
bp_scripts/write_blast | [new file with mode: 0755] | blob |
bp_scripts/write_fasta | [new file with mode: 0755] | blob |
bp_scripts/write_psl | [new file with mode: 0755] | blob |
bp_scripts/write_solid | [new file with mode: 0755] | blob |
bp_scripts/write_tab | [new file with mode: 0755] | blob |
bp_usage/add_ident | [new file with mode: 0644] | blob |
bp_usage/align_seq | [new file with mode: 0644] | blob |
bp_usage/analyze_bed | [new file with mode: 0644] | blob |
bp_usage/analyze_seq | [new file with mode: 0644] | blob |
bp_usage/analyze_tags | [new file with mode: 0644] | blob |
bp_usage/analyze_vals | [new file with mode: 0644] | blob |
bp_usage/blast_seq | [new file with mode: 0644] | blob |
bp_usage/blat_seq | [new file with mode: 0644] | blob |
bp_usage/calc_bit_scores | [new file with mode: 0644] | blob |
bp_usage/complement_seq | [new file with mode: 0644] | blob |
bp_usage/complexity_seq | [new file with mode: 0644] | blob |
bp_usage/compute | [new file with mode: 0644] | blob |
bp_usage/count_records | [new file with mode: 0644] | blob |
bp_usage/count_seq | [new file with mode: 0644] | blob |
bp_usage/count_vals | [new file with mode: 0644] | blob |
bp_usage/create_blast_db | [new file with mode: 0644] | blob |
bp_usage/create_vmatch_index | [new file with mode: 0644] | blob |
bp_usage/create_weight_matrix | [new file with mode: 0644] | blob |
bp_usage/extract_seq | [new file with mode: 0644] | blob |
bp_usage/flip_tab | [new file with mode: 0644] | blob |
bp_usage/fold_seq | [new file with mode: 0644] | blob |
bp_usage/get_genome_align | [new file with mode: 0644] | blob |
bp_usage/get_genome_phastcons | [new file with mode: 0644] | blob |
bp_usage/get_genome_seq | [new file with mode: 0644] | blob |
bp_usage/grab | [new file with mode: 0644] | blob |
bp_usage/head_records | [new file with mode: 0644] | blob |
bp_usage/invert_align | [new file with mode: 0644] | blob |
bp_usage/length_seq | [new file with mode: 0644] | blob |
bp_usage/length_vals | [new file with mode: 0644] | blob |
bp_usage/list_biotools | [new file with mode: 0644] | blob |
bp_usage/match_seq | [new file with mode: 0644] | blob |
bp_usage/max_vals | [new file with mode: 0644] | blob |
bp_usage/mean_vals | [new file with mode: 0644] | blob |
bp_usage/median_vals | [new file with mode: 0644] | blob |
bp_usage/merge_vals | [new file with mode: 0644] | blob |
bp_usage/min_vals | [new file with mode: 0644] | blob |
bp_usage/oligo_freq | [new file with mode: 0644] | blob |
bp_usage/patscan_seq | [new file with mode: 0644] | blob |
bp_usage/plot_chrdist | [new file with mode: 0644] | blob |
bp_usage/plot_histogram | [new file with mode: 0644] | blob |
bp_usage/plot_karyogram | [new file with mode: 0644] | blob |
bp_usage/plot_lendist | [new file with mode: 0644] | blob |
bp_usage/plot_matches | [new file with mode: 0644] | blob |
bp_usage/plot_phastcons_profiles | [new file with mode: 0644] | blob |
bp_usage/plot_seqlogo | [new file with mode: 0644] | blob |
bp_usage/print_usage | [new file with mode: 0644] | blob |
bp_usage/random_records | [new file with mode: 0644] | blob |
bp_usage/read_2bit | [new file with mode: 0644] | blob |
bp_usage/read_align | [new file with mode: 0644] | blob |
bp_usage/read_bed | [new file with mode: 0644] | blob |
bp_usage/read_blast_tab | [new file with mode: 0644] | blob |
bp_usage/read_embl | [new file with mode: 0644] | blob |
bp_usage/read_fasta | [new file with mode: 0644] | blob |
bp_usage/read_gff | [new file with mode: 0644] | blob |
bp_usage/read_mysql | [new file with mode: 0644] | blob |
bp_usage/read_phastcons | [new file with mode: 0644] | blob |
bp_usage/read_psl | [new file with mode: 0644] | blob |
bp_usage/read_soft | [new file with mode: 0644] | blob |
bp_usage/read_solexa | [new file with mode: 0644] | blob |
bp_usage/read_solid | [new file with mode: 0644] | blob |
bp_usage/read_stockholm | [new file with mode: 0644] | blob |
bp_usage/read_tab | [new file with mode: 0644] | blob |
bp_usage/remove_indels | [new file with mode: 0644] | blob |
bp_usage/remove_keys | [new file with mode: 0644] | blob |
bp_usage/rename_keys | [new file with mode: 0644] | blob |
bp_usage/reverse_seq | [new file with mode: 0644] | blob |
bp_usage/shuffle_seq | [new file with mode: 0644] | blob |
bp_usage/sort_records | [new file with mode: 0644] | blob |
bp_usage/split_bed | [new file with mode: 0644] | blob |
bp_usage/split_seq | [new file with mode: 0644] | blob |
bp_usage/sum_vals | [new file with mode: 0644] | blob |
bp_usage/tile_seq | [new file with mode: 0644] | blob |
bp_usage/translate_seq | [new file with mode: 0644] | blob |
bp_usage/transliterate_seq | [new file with mode: 0644] | blob |
bp_usage/transliterate_vals | [new file with mode: 0644] | blob |
bp_usage/uniq_vals | [new file with mode: 0644] | blob |
bp_usage/upload_to_ucsc | [new file with mode: 0644] | blob |
bp_usage/uppercase_seq | [new file with mode: 0644] | blob |
bp_usage/vmatch_seq | [new file with mode: 0644] | blob |
bp_usage/write_2bit | [new file with mode: 0644] | blob |
bp_usage/write_align | [new file with mode: 0644] | blob |
bp_usage/write_bed | [new file with mode: 0644] | blob |
bp_usage/write_blast | [new file with mode: 0644] | blob |
bp_usage/write_fasta | [new file with mode: 0644] | blob |
bp_usage/write_psl | [new file with mode: 0644] | blob |
bp_usage/write_solid | [new file with mode: 0644] | blob |
bp_usage/write_tab | [new file with mode: 0644] | blob |
code_c/Maasha/src/Makefile | [new file with mode: 0644] | blob |
code_c/Maasha/src/fasta_count | [new file with mode: 0755] | blob |
code_c/Maasha/src/fasta_count.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/gmon.out | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/common.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/fasta.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/filesys.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/hash.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/list.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/seq.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/inc/ucsc.h | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/Makefile | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/biotools.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/common.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/fasta.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/filesys.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/hash.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/list.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/seq.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/lib/ucsc.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/repeat-O-matic | [new file with mode: 0755] | blob |
code_c/Maasha/src/repeat-O-matic.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test2 | [new file with mode: 0755] | blob |
code_c/Maasha/src/test2.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_bed | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_bed.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_binary_search | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_binary_search.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_biotools | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_biotools.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_fasta | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_fasta.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_file_buffer | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_file_buffer.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_hash | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_hash.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_list | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_list.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_oligo2bin | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_oligo2bin.c | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_revcomp | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_revcomp.c | [new file with mode: 0644] | blob |
code_c/Maasha/src/test_split | [new file with mode: 0755] | blob |
code_c/Maasha/src/test_split.c | [new file with mode: 0644] | blob |
code_perl/Maasha/Align.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/AlignTwoSeq.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Berkeley_DB.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Biotools.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Blast.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Calc.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Common.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Config.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/DumpFunc.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/EMBL.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Fasta.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/GFF.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Match.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Matrix.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/NCBI.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Patscan.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Plot.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/README | [new file with mode: 0644] | blob |
code_perl/Maasha/SQL.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Seq.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Solid.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Stockholm.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/Test.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/TwoBit.pm | [new file with mode: 0644] | blob |
code_perl/Maasha/UCSC.pm | [new file with mode: 0644] | blob |
code_perl/README | [new file with mode: 0644] | blob |