+#ifndef WIGGLE_H_
+#define WIGGLE_H_
+
#include <cstdio>
#include <string>
#include <vector>
#include <ostream>
+extern bool no_fractional_weight; // if no_frac_weight == true, each alignment counts as weight 1
+
struct Wiggle {
std::string name;
- std::vector<float> read_depth;
+ std::vector<double> read_depth;
size_t length;
};
void build_wiggles(const std::string& bam_filename,
WiggleProcessor& processor);
+
+#endif