class Weighted : public TreeCalculator {
public:
- Weighted(TreeMap* t) : tmap(t) {};
+ Weighted(TreeMap* t, bool r) : tmap(t), includeRoot(r) {};
~Weighted() {};
- EstOutput getValues(Tree*, string, string, vector<double>&);
+ EstOutput getValues(Tree*, string, string);
EstOutput getValues(Tree*, int, string);
- vector<double> getBranchLengthSums(Tree*);
-
private:
struct linePair {
int start;
map<string, double> WScore; //a score for each group combination i.e. AB, AC, BC.
int processors;
string outputDir;
+ map< vector<string>, set<int> > rootForGrouping; //maps a grouping combo to the root for that combo
+ bool includeRoot;
- EstOutput driver(Tree*, vector< vector<string> >, int, int, vector<double>&);
- EstOutput createProcesses(Tree*, vector< vector<string> >, vector<double>&);
+ EstOutput driver(Tree*, vector< vector<string> >, int, int);
+ EstOutput createProcesses(Tree*, vector< vector<string> >);
+ double getLengthToRoot(Tree*, int, string, string);
};
/***********************************************************************/