Weighted(TreeMap* t) : tmap(t) {};
~Weighted() {};
- EstOutput getValues(Tree*, string, string, vector<double>&);
+ EstOutput getValues(Tree*, string, string);
EstOutput getValues(Tree*, int, string);
- vector<double> getBranchLengthSums(Tree*);
-
private:
struct linePair {
int start;
int num;
linePair(int i, int j) : start(i), num(j) {}
};
- vector<linePair*> lines;
+ vector<linePair> lines;
GlobalData* globaldata;
EstOutput data;
int processors;
string outputDir;
- EstOutput driver(Tree*, vector< vector<string> >, int, int, vector<double>&);
- EstOutput createProcesses(Tree*, vector< vector<string> >, vector<double>&);
+ EstOutput driver(Tree*, vector< vector<string> >, int, int);
+ EstOutput createProcesses(Tree*, vector< vector<string> >);
+ double getLengthToRoot(Tree*, int, string, string);
};
/***********************************************************************/