#include "command.hpp"
#include "inputdata.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
#include "sharedlistvector.h"
#include "venn.h"
+#include "validcalculator.h"
class GlobalData;
private:
GlobalData* globaldata;
- ReadMatrix* read;
+ ReadOTUFile* read;
InputData* input;
SharedListVector* SharedList;
- SharedOrderVector* order;
- OrderVector* ordersingle;
Venn* venn;
string format;
-
- void setGroups();
+ vector<Calculator*> vennCalculators;
+ ValidCalculators* validCalculator;
+ vector<SharedRAbundVector*> lookup;
+ SAbundVector* sabund;
+ int abund;
};