vector<string> setParameters();
string getCommandName() { return "venn"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
- string getOutputFileNameTag(string, string);
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Venn"; }
string getDescription() { return "generates a Venn diagram from data provided in a shared file"; }
Venn* venn;
vector<Calculator*> vennCalculators;
vector<SharedRAbundVector*> lookup;
- set< set<int> > combosOfFour;
+ set< set<int> > combos;
SAbundVector* sabund;
- int abund, fontsize;
+ int abund, fontsize, perm;
- bool abort, allLines, nseqs, perm;
+ bool abort, allLines, nseqs, sharedOtus;
set<string> labels; //holds labels to be used
string format, groups, calc, label, outputDir, sharedfile, listfile, inputfile;
vector<string> Estimators, Groups, outputNames;