pds - modified strip barcode funcrtion in trimseqscommand

[mothur.git] / validparameter.h

diff --git a/validparameter.h b/validparameter.h
index ff886efa6294f20e3ab53666a448afbe4db8ff07..9aeafa23a6b03f619393cc502e2c1fade566ee2a 100644 (file)
--- a/validparameter.h
+++ b/validparameter.h
@@ -11,6 +11,7 @@
  */
 
 #include "mothur.h"
+#include "mothurout.h"
 
 //This class contains a list of all valid parameters in Mothur.  
 //It has a function which will tell you if your parameter is valid.
@@ -22,16 +23,16 @@ class ValidParameters {
        public:
                ValidParameters();
                ~ValidParameters();
-               bool isValidParameter(string);
-               bool isValidParameter(string, string, string);
+               //bool isValidParameter(string, string, string) {return true;}
+               bool isValidParameter(string, vector<string>, string);
                vector <string> addParameters(string[], int);
-               void initCommandParameters();
                void initParameterRanges();
+               string validFile(map<string, string>, string, bool); //container, parameter, isFile
 
        private:
                map<string, string>::iterator it;
-               map<string, vector<string> > commandParameters;
                map<string, vector<string> > parameterRanges;
+               MothurOut* m;
 
 };